Evidence map›Paper›PMID 18772145›Full record

ArticleThe Journal of biological chemistry2008

Identification of proteins binding to E-Box/Ku86 sites and function of the tumor suppressor SAFB1 in transcriptional regulation of the human xanthine oxidoreductase gene.

Junji Lin, Ping Xu, Patricia LaVallee, John R Hoidal

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  5. Review
  6. Scaffold attachment factor B suppresses HIV-1 infection of CD4The Journal of biological chemistry · 2018
    Article
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  14. Acquired xanthine dehydrogenase expression shortens survival in patients with resected adenocarcinoma of lung.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2012
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Junji LinDepartment of Internal Medicine, Division of Respiratory, Critical Care, and Occupational Medicine, University of Utah Health Sciences Center and Veterans Affairs Medical Center, Salt Lake City, Utah 84132, USA.
Ping Xu
Patricia LaVallee
John R Hoidal
University of Utah · USFudan University · CN

Funding

PATHOBIOCHEMISTRY OF ACUTE LUNG INJURYR01HL040665 · NHLBI · UNIVERSITY OF UTAH · PI HOIDAL, JOHN R · 1988 to 2000
$167k
NHLBI NIH HHS 5R01HL40665
6 · The paper itself

Abstract

The xanthine oxidoreductase gene (XOR) encodes an important source of reactive oxygen species and uric acid, and its expression is associated with various human diseases including several forms of cancer. We previously reported that basal human XOR (hXOR) expression is restricted or repressed by E-box and TATA-like elements and a cluster of transcriptional proteins, including AREB6-like proteins and DNA-dependent protein kinase (DNA-PK). We now demonstrate that the cluster contains the tumor suppressors SAFB1, BRG1, and SAF-A. We further demonstrate that SAFB1 silencing increases hXOR expression and that SAFB1 directly binds to the E-box. Multiple studies in vitro and in vivo including pulldown, immunoprecipitation and chromatin immunoprecipitation analyses indicate that SAFB1, Ku86, and BRG1 associate with each other. The results suggest that the SAFB1 complex binds to the hXOR promoter in a chromatin environment and plays a critical role in restricting hXOR expression via its direct interaction with the E-box, DNA-PK, and tumor suppressors. Moreover, we demonstrate that the cytokine, oncostatin M (OSM), induces the phosphorylation of SAFB1 and that the OSM-induced hXOR mRNA expression is significantly inhibited by silencing the DNA-PK catalytic subunit or SAFB1 expression. The present studies for the first time demonstrate that hXOR is a tumor suppressor-targeted gene and that the phosphorylation of SAFB1 is regulated by OSM, providing a molecular basis for understanding the role of SAFB1-regulated hXOR transcription in cytokine stimulation and tumorigenesis.

Indexed as

Gene Expression RegulationAntigens, NuclearCell NucleusChromatin ImmunoprecipitationCytokinesDNA-Binding ProteinsGene Expression Regulation, NeoplasticGene SilencingHumansKu AutoantigenMatrix Attachment Region Binding ProteinsModels, BiologicalNuclear Matrix-Associated ProteinsOncostatin MPhosphorylationReceptors, EstrogenAntigens, NuclearCytokinesDNA-Binding ProteinsKu AutoantigenMatrix Attachment Region Binding ProteinsNuclear Matrix-Associated ProteinsOncostatin MReceptors, EstrogenRecombinant ProteinsSAFB protein, humanXanthine DehydrogenaseXrcc6 protein, human

Identifiers

PMID18772145
PMCPMC2573066
OpenAlexW1989465053

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.