Evidence map›Paper›PMID 18771418›Full record

ArticleDNA and cell biology2008

Regulation of the mouse Treacher Collins syndrome homolog (Tcof1) promoter through differential repression of constitutive expression.

Kathryn H Shows, Rita Shiang

Open access · greenAbstract read
In one paragraph

Article in DNA and cell biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  4. The Role ofInternational journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kathryn H ShowsDepartment of Human and Molecular Genetics, Virginia Commonwealth University School of Medicine, Richmond, Virginia 23298-0033, USA. khshows@vcu.edu
Rita Shiang
Virginia Commonwealth University · US

Funding

CHARACTERIZATION OF THE TREACHER COLLINS SYNDROME GENER01DE013172 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI SHIANG, RITA · 2001 to 2005
$1.4M
Regulation of Treacher Collins Syndrome TCOF1 geneF32DE017065 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI SHOWS, KATHRYN H · 2005 to 2007
$155k
NIDCR NIH HHS F32-DE017065NIDCR NIH HHS R01 DE013172NIDCR NIH HHS R01-DE13172
6 · The paper itself

Abstract

Treacher Collins syndrome is an autosomal-dominant mandibulofacial dysostosis caused by haploinsufficiency of the TCOF1 gene product treacle. Mouse Tcof1 protein is approximately 61% identical and 71% similar to treacle, and heterozygous knockout of Tcof1 causes craniofacial malformation. Tcof1 expression is high in developing neural crest, but much lower in other tissues. To investigate this dual regulation, highly conserved regions upstream of TCOF1 homologs were tested through deletion and mutation reporter assays, and conserved predicted transcription factor binding sites were assessed through chromatin binding studies. Assays were performed in mouse P19 embryonic carcinoma cells and in HEK293 cells to determine differential activation in cell types at different stages of differentiation. Binding of Cebpb, Zfp161, and Sp1 transcription factors was specific to the Tcof1 regulatory region in P19 cells. The Zfp161 binding site demonstrated P19 cell-specific repression, while the Sp1/Sp3 candidate site demonstrated HEK293 cell-specific activation. Moreover, presence of c-myb and Zfp161 transcripts was specific to P19 cells. A minimal promoter fragment from -253 to +43 bp directs constitutive expression in both cell types, and dual regulation of Tcof1 appears to be through differential repression of this minimal promoter. The CpG island at the transcription start site remains unmethylated in P19 cells, 11.5 dpc mouse embryonic tissue, and adult mouse ear, which supports constitutive activation of the Tcof1 promoter.

Indexed as

Gene Expression RegulationAnimalsBase SequenceCell LineCpG IslandsDNA MethylationHumansIntracellular Signaling Peptides and ProteinsMiceMolecular Sequence DataNuclear ProteinsPhosphoproteinsPromoter Regions, GeneticTranscription FactorsIntracellular Signaling Peptides and ProteinsNuclear ProteinsPhosphoproteinsTCOF1 protein, humanTcof1 protein, mouseTranscription Factors

Identifiers

PMID18771418
PMCPMC2925028
OpenAlexW2012287820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.