Evidence map›Paper›PMID 18769914›Full record

ArticleEuropean biophysics journal : EBJ2008

satFRET: estimation of Förster resonance energy transfer by acceptor saturation.

Martin Beutler, Konstantina Makrogianneli, Rudolf J Vermeij, Melanie Keppler, Tony Ng, Thomas M Jovin, Rainer Heintzmann

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In one paragraph

Article in European biophysics journal : EBJ, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Martin BeutlerMicrosensor Research Group, Max-Planck-Institute for Marine Microbiology, Celsiusstrasse 1, Bremen, Germany. MartinBeutler@gmx.de
Konstantina Makrogianneli
Rudolf J Vermeij
Melanie Keppler
Tony Ng
Thomas M Jovin
Rainer Heintzmann
King's College London · GBMax Planck Institute for Biophysical Chemistry · DEMax Planck Institute for Marine Microbiology · DEUniversity of Twente · NL

Funding

Medical Research Council G0100152
6 · The paper itself

Abstract

We demonstrate theoretically and experimentally the quantification of Förster resonance energy transfer (FRET) by direct and systematic saturation of the excited state of acceptor molecules. This version of acceptor depletion methods for FRET estimation, denoted as "satFRET" is reversible and suitable for time-resolved measurements. The technique was investigated theoretically using the steady-state solution of the differential equation system of donor and acceptor molecular states. The influence of acceptor photobleaching during measurement was included in the model. Experimental verification was achieved with the FRET-pair Alexa 546- Alexa 633 loaded on particles in different stoichiometries and measured in a confocal microscope. Estimates of energy transfer efficiency by excited state saturation were compared to those obtained by measurements of sensitised emission and acceptor photobleaching. The results lead to a protocol that allows time-resolved FRET measurements of fixed and living cells on a conventional confocal microscope. This procedure was applied to fixed Chinese hamster ovary cells containing a cyan fluorescent protein and yellow fluorescent protein pair. The time resolution of the technique was demonstrated in a live T cell activation assay comparing the FRET efficiencies measured using a genetically encoded green and red fluorescent protein biosensor for GTP/GDP turnover to those measured by acceptor photobleaching of fixed cells.

Indexed as

AlgorithmsModels, BiologicalModels, ChemicalBinding SitesComputer SimulationFluorescence Resonance Energy TransferProtein BindingProtein Interaction Mapping

Identifiers

PMID18769914
OpenAlexW2006798626

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.