Evidence map›Paper›PMID 18768964›Full record

ArticleJournal of virology2008

Conserved salt bridge between the N- and C-terminal heptad repeat regions of the human immunodeficiency virus type 1 gp41 core structure is critical for virus entry and inhibition.

Yuxian He, Shuwen Liu, Jingjing Li, Hong Lu, Zhi Qi, Zhonghua Liu, Asim K Debnath, Shibo Jiang

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 65 citations in OpenAlex.

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  20. Pharmacophore-based similarity scoring for DOCK.The journal of physical chemistry. B · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yuxian HeLindsley F. Kimball Research Institute, New York Blood Center, 310 East 67th Street, New York, NY 10021, USA. yhe@nybloodcenter.org
Shuwen Liu
Jingjing Li
Hong Lu
Zhi Qi
Zhonghua Liu
Asim K Debnath
Shibo Jiang
New York Blood Center · USChinese Academy of Medical Sciences & Peking Union Medical College · CNSouthern Medical University · CN

Funding

Rational Design of HIV Fusion Inhibitors Targeting gp41R01AI046221 · NIAID · NEW YORK BLOOD CENTER · PI JIANG, SHIBO · 2000 to 2010
$3.3M
Rational Design of HIV Fusion Inhibitors Targeting gp41R21AI046221 · NIAID · NEW YORK BLOOD CENTER · PI JIANG, SHIBO · 2004 to 2004
$312k
NIAID NIH HHS AI 46221NIAID NIH HHS R01 AI046221NIAID NIH HHS R21 AI046221
6 · The paper itself

Abstract

The fusogenic human immunodeficiency virus type 1 (HIV-1) gp41 core structure is a stable six-helix bundle formed by its N- and C-terminal heptad repeat sequences. Notably, the negatively charged residue Asp(632) located at the pocket-binding motif in the C-terminal heptad repeat interacts with the positively charged residue Lys(574) in the pocket formation region of the N-terminal heptad repeat to form a salt bridge. We previously demonstrated that the residue Lys(574) plays an essential role in six-helix bundle formation and virus infectivity and is a key determinant of the target for anti-HIV fusion inhibitors. In this study, the functionality of residue Asp(632) has been specifically characterized by mutational analysis and biophysical approaches. We show that Asp(632) substitutions with positively charged residues (D632K and D632R) or a hydrophobic residue (D632V) could completely abolish Env-mediated viral entry, while a protein with a conserved substitution (D632E) retained its activity. Similar to the Lys(574) mutations, nonconserved substitutions of Asp(632) also severely impaired the alpha-helicity, stability, and conformation of six-helix bundles as shown by N36 and C34 peptides as a model system. Furthermore, nonconserved substitutions of Asp(632) significantly reduced the potency of C34 to sequestrate six-helix bundle formation and to inhibit HIV-1-mediated cell-cell fusion and infection, suggesting its importance for designing antiviral fusion inhibitors. Taken together, these data suggest that the salt bridge between the N- and C-terminal heptad repeat regions of the fusion-active HIV-1 gp41 core structure is critical for viral entry and inhibition.

Indexed as

Virus InternalizationAmino Acid SubstitutionCell LineCircular DichroismHIV-1HIV Envelope Protein gp41HumansModels, MolecularMutagenesis, Site-DirectedProtein Structure, Secondarygp41 protein, Human immunodeficiency virus 1HIV Envelope Protein gp41

Identifiers

PMID18768964
PMCPMC2573276
OpenAlexW1969096518

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.