Evidence map›Paper›PMID 18765821›Full record

ArticleGenome research2008

Unexpected complexity at breakpoint junctions in phenotypically normal individuals and mechanisms involved in generating balanced translocations t(1;22)(p36;q13).

Marzena Gajecka, Andrew J Gentles, Albert Tsai, David Chitayat, Katherine L Mackay, Caron D Glotzbach, Michael R Lieber, Lisa G Shaffer

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 101 citations in OpenAlex.

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  4. Unrevealed mosaicism in the next-generation sequencing era.Molecular genetics and genomics : MGG · 2016
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  17. Mechanisms of change in gene copy number.Nature reviews. Genetics · 2009
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Marzena GajeckaSchool of Molecular Biosciences, Washington State University, Spokane, Washington 99202, USA.
Andrew J Gentles
Albert Tsai
David Chitayat
Katherine L Mackay
Caron D Glotzbach
Michael R Lieber
Lisa G Shaffer
Washington State University Spokane · USUniversity of Southern California · USMount Sinai Hospital · CAStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Approximately one in 500 individuals carries a reciprocal translocation. Balanced translocations are usually associated with a normal phenotype unless the translocation breakpoints disrupt a gene(s) or cause a position effect. We investigated breakpoint junctions at the sequence level in phenotypically normal balanced translocation carriers. Eight breakpoint junctions derived from four nonrelated subjects with apparently balanced translocation t(1;22)(p36;q13) were examined. Additions of nucleotides, deletions, duplications, and a triplication identified at the breakpoints demonstrate high complexity at the breakpoint junctions and indicate involvement of multiple mechanisms in the DNA breakage and repair process during translocation formation. Possible detailed nonhomologous end-joining scenarios for t(1;22) cases are presented. We propose that cryptic imbalances in phenotypically normal, balanced translocation carriers may be more common than currently appreciated.

Indexed as

Chromosome BreakageTranslocation, GeneticBase SequenceChromosomes, Human, Pair 1Chromosomes, Human, Pair 22DNADNA RepairFemaleHumansMaleModels, GeneticMolecular Sequence DataPhenotypeDNA

Identifiers

PMID18765821
PMCPMC2577863
OpenAlexW2125087555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.