Evidence map›Paper›PMID 18765368›Full record

ArticleTree physiology2008

Characterization and expression of a Pinus radiata putative ortholog to the Arabidopsis SHORT-ROOT gene.

Alicia Solé, Conchi Sánchez, Jesús M Vielba, Silvia Valladares, Dolores Abarca, Carmen Díaz-Sala

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In one paragraph

Article in Tree physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
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  6. Review
  7. Article
  8. Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  9. Adventitious Root Formation in Tree Species.Plants (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Genome-wide identification, phylogeny and expression analyses ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2017
    Article
  18. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Alicia SoléDepartment of Plant Biology, University of Alcalá, 28871 Alcalá de Henares, Madrid, Spain.
Conchi Sánchez
Jesús M Vielba
Silvia Valladares
Dolores Abarca
Carmen Díaz-Sala
Instituto de Investigaciones Agrobiológicas de Galicia · ESUniversidad de Alcalá · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We characterized a Pinus radiata D. Don putative ortholog to the Arabidopsis thaliana (L.) Heynh. SHORT--ROOT gene (AtSHR) and analyzed its expression in different organs during vegetative development and in response to exogenous auxin during adventitious rooting. The predicted protein sequence contained domains characteristic of the GRAS protein family and showed a strong similarity to the SHORT--ROOT (SHR) proteins. Quantitative reverse transcriptase--polymerase chain reaction (qRT-PCR) and in situ hybridization showed that the gene is predominantly expressed in roots, root primordia and in the cambial region of hypocotyl cuttings. Increased mRNA levels were observed, independently of the presence or absence of exogenous auxin, in the cambial region and rooting competent cells of hypocotyl cuttings within the first 24 h of adventitious rooting, before the activation of cell divisions and the organization of the adventitious root meristem. The expression pattern in organs and during adventitious rooting was similar to that of a Pinus radiata SCARECROW-LIKE (PrSCL1) gene, except that PrSCL1 is induced in response to exogenous auxin. Results suggest that the Pinus radiata SHORT-ROOT (PrSHR) gene has a role in root meristem formation and maintenance and in the cambial region of hypocotyl cuttings.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantIndoleacetic AcidsMolecular Sequence DataPhylogenyPinusPlant RootsRNA, MessengerTranscription FactorsArabidopsis ProteinsIndoleacetic AcidsRNA, MessengerSHORT ROOT protein, ArabidopsisTranscription Factors

Identifiers

PMID18765368
OpenAlexW2052378537

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.