Evidence map›Paper›PMID 18761624›Full record

ArticleMolecular microbiology2008

General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain.

Yi-Xin Huo, Adam Z Rosenthal, Jay D Gralla

Abstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yi-Xin HuoDepartment of Chemistry and Biochemistry and the Molecular Biology Institute, University of California, PO Box 951569, Los Angeles, CA 90095, USA.
Adam Z Rosenthal
Jay D Gralla

Funding

MECHANISMS OF REPRESSION IN BACTERIAR01GM035754 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRALLA, JAY D · 1986 to 2006
$2.0M
NIGMS NIH HHS GM35754NIGMS NIH HHS R01 GM035754
6 · The paper itself

Abstract

Escherichia coli responds to stress by a combination of specific and general transcription signalling pathways. The general pathways typically require the master stress regulator sigma38 (rpoS). Here we show that the signalling from multiple stresses that relax DNA is processed by a non-conserved eight-amino-acid tail of the sigma 38 C-terminal domain. By contrast, responses to two stresses that accumulate potassium glutamate do not rely on this short tail, but still require the overall C-terminal domain. In vitro transcription and footprinting studies suggest that multiple stresses can target a poised RNA polymerase and activate it by unwrapping DNA from a nucleosome-like state, allowing the RNA polymerase to escape into productive mode. This transition can be accomplished by either the DNA relaxation or potassium glutamate accumulation that characterizes many stresses.

Indexed as

Gene Expression RegulationTranscription, GeneticAdaptation, PhysiologicalAmino Acid SequenceBacterial ProteinsDNA, BacterialDNA FootprintingEscherichia coliMolecular Sequence DataProtein Structure, TertiarySigma FactorBacterial ProteinsDNA, BacterialSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID18761624
PMCPMC2775543

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.