Evidence map›Paper›PMID 18761620›Full record

ArticleMolecular microbiology2008

Assembly of the translocase motor onto the preprotein-conducting channel.

Spyridoula Karamanou, Vassiliki Bariami, Efrosyni Papanikou, Charalampos G Kalodimos, Anastassios Economou

Abstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.Progress in nuclear magnetic resonance spectroscopy · 2016
    Review
  7. Article
  8. Article
  9. Biogenesis of bacterial inner-membrane proteins.Cellular and molecular life sciences : CMLS · 2010
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Spyridoula KaramanouInstitute of Molecular Biology and Biotechnology-FoRTH, PO Box 1385, Iraklio, Crete, Greece.
Vassiliki Bariami
Efrosyni Papanikou
Charalampos G Kalodimos
Anastassios Economou

Funding

Structural basis for the assembly of the Sec translocase machineryR01GM073854 · NIGMS · UNIVERSITY OF MINNESOTA · PI KALODIMOS, CHARALAMPOS · 2007 to 2016
$3.1M
NIGMS NIH HHS R01 GM073854
6 · The paper itself

Abstract

Bacterial protein secretion is catalysed by the SecYEG protein-conducting channel complexed with the SecA ATPase motor. To gain insight into the SecA-SecYEG interaction we used peptide arrays, thermodynamic quantification, mutagenesis and functional assays. Our data reveal that: (i) SecA binds with low affinity on several, peripheral, exposed SecYEG sites. This largely electrostatic association is modulated by temperature and nucleotides. (ii) Binding sites cluster in five major binding 'regions': three that are exclusively cytoplasmic and two that reach the periplasm. (iii) Both the N-terminal and c-terminal regions of SecA participate in binding interactions and share some sites. (iv) Several of these sites are essential for translocase catalysis. Our data provide residue-level dissection of the SecYEG-SecA interaction. Two models of assembly of SecA on dimeric SecYEG are discussed.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsEscherichia coliEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsModels, BiologicalModels, MolecularProtein BindingProtein Interaction MappingProtein TransportSecA ProteinsSEC Translocation ChannelsAdenosine TriphosphatasesBacterial ProteinsEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsSecA ProteinsSecE protein, E coliSecG protein, E coliSEC Translocation ChannelsSecY protein, E coli

Identifiers

PMID18761620
PMCPMC2603171

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.