Evidence map›Paper›PMID 18759974›Full record

ArticleBMC immunology2008

Primer sets for cloning the human repertoire of T cell Receptor Variable regions.

Ilenia Boria, Diego Cotella, Irma Dianzani, Claudio Santoro, Daniele Sblattero

Abstract read
In one paragraph

Article in BMC immunology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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  14. Engineered cytotoxic T lymphocytes with AFP-specific TCR gene for adoptive immunotherapy in hepatocellular carcinoma.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ilenia BoriaDepartment of Medical Sciences and Interdisciplinary Research Centre for Autoimmune Diseases, via Solaroli 17, 28100, Novara, Italy. boria@med.unipmn.it
Diego Cotella
Irma Dianzani
Claudio Santoro
Daniele Sblattero

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAmplification and cloning of naïve T cell Receptor (TR) repertoires or antigen-specific TR is crucial to shape immune response and to develop immuno-based therapies. TR variable (V) regions are encoded by several genes that recombine during T cell development. The cloning of expressed genes as large diverse libraries from natural sources relies upon the availability of primers able to amplify as many V genes as possible.

resultsHere, we present a list of primers computationally designed on all functional TR V and J genes listed in the IMGT, the ImMunoGeneTics information system. The list consists of unambiguous or degenerate primers suitable to theoretically amplify and clone the entire TR repertoire. We show that it is possible to selectively amplify and clone expressed TR V genes in one single RT-PCR step and from as little as 1000 cells.

conclusionThis new primer set will facilitate the creation of more diverse TR libraries than has been possible using currently available primer sets.

Indexed as

Cloning, MolecularGenes, T-Cell ReceptorAlgorithmsAntigensBase SequenceComplementarity Determining RegionsDNA PrimersGene LibraryGene Rearrangement, T-LymphocyteHumansImmunoglobulin Variable RegionLeukocytes, MononuclearReceptors, Antigen, T-CellReverse Transcriptase Polymerase Chain ReactionT-Cell Antigen Receptor SpecificityAntigensComplementarity Determining RegionsDNA PrimersImmunoglobulin Variable RegionReceptors, Antigen, T-Cell

Identifiers

PMID18759974
PMCPMC2551579

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.