Evidence map›Paper›PMID 18759011›Full record

ArticleMolecular biotechnology2009

Increased gene targeting in Ku70 and Xrcc4 transiently deficient human somatic cells.

Luciana R Bertolini, Marcelo Bertolini, Elizabeth A Maga, Knut R Madden, James D Murray

Abstract read
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In one paragraph

Article in Molecular biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Biallelic Gene Targeting in Rice.Plant physiology · 2016
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Recent advances in the development of new transgenic animal technology.Cellular and molecular life sciences : CMLS · 2013
    Review
  9. Article
  10. Article
  11. Article
  12. Efficient and accurate homologous recombination in hESCs and hiPSCs using helper-dependent adenoviral vectors.Molecular therapy : the journal of the American Society of Gene Therapy · 2012
    Article
  13. Review
  14. Article
  15. Transgenic pigs as models for translational biomedical research.Journal of molecular medicine (Berlin, Germany) · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Luciana R BertoliniDepartment of Animal Science, University of California, Davis, CA, USA.
Marcelo Bertolini
Elizabeth A Maga
Knut R Madden
James D Murray

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The insertion of foreign DNA at a specific genomic locus directed by homologous DNA sequences, or gene targeting, is an inefficient process in mammalian somatic cells. Given the key role of non-homologous end joining (NHEJ) pathway in DNA double-strand break (DSB) repair in mammalian cells, we investigated the effects of decreasing NHEJ protein levels on gene targeting. Here we demonstrate that the transient knockdown of integral NHEJ proteins, Ku70 and Xrcc4, by RNAi in human HCT116 cells has a remarkable effect on gene targeting/random insertions ratios. A timely transfection of an HPRT-based targeting vector after RNAi treatment led to a 70% reduction in random integration events and a 33-fold increase in gene targeting at the HPRT locus. These findings bolster the role of NHEJ proteins in foreign DNA integration in vivo, and demonstrate that their transient depletion by RNAi is a viable approach to increase the frequency of gene targeting events. Understanding how foreign DNA integrates into a cell's genome is important to advance strategies for biotechnology and genetic medicine.

Indexed as

Analysis of VarianceAntigens, NuclearChi-Square DistributionDNA-Binding ProteinsDNA RepairGene TargetingHCT116 CellsHumansHypoxanthine PhosphoribosyltransferaseKu AutoantigenPolymerase Chain ReactionRecombination, GeneticRNA InterferenceThioguanineAntigens, NuclearDNA-Binding ProteinsHypoxanthine PhosphoribosyltransferaseKu AutoantigenThioguanineXRCC4 protein, humanXrcc6 protein, human

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.