Evidence map›Paper›PMID 18758464›Full record

ArticleNature genetics2008

Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.

Subra Kugathasan, Robert N Baldassano, Jonathan P Bradfield, Patrick M A Sleiman, Marcin Imielinski, Stephen L Guthery, Salvatore Cucchiara, Cecilia E Kim, Edward C Frackelton, Kiran Annaiah and 20 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 167 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
167citing papers in PubMed, 10 pooled it
21.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

167 citing papers in PubMed, 10 syntheses or guidelines pooled it, 317 citations in OpenAlex.

  1. Pooled it
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  5. Genetic comorbidities in Parkinson's disease.Human molecular genetics · 2014
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  13. TET1 deficiency amplifies macrophage inflammatory signaling associated with Crohn's disease.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Article
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107 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 7 institutions in 2 countries.

Subra KugathasanDepartment of Pediatrics, Children's Research Institute and Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA.
Robert N Baldassano
Jonathan P Bradfield
Patrick M A Sleiman
Marcin Imielinski
Stephen L Guthery
Salvatore Cucchiara
Cecilia E Kim
Edward C Frackelton
Kiran Annaiah
Joseph T Glessner
Erin Santa
Tara Willson
Andrew W Eckert
Erin Bonkowski
Julie L Shaner
Ryan M Smith
F George Otieno
Nicholas Peterson
Debra J Abrams
Rosetta M Chiavacci
Robert Grundmeier
Petar Mamula
Gitit Tomer
David A Piccoli
Dimitri S Monos
Vito Annese
Lee A Denson
Struan F A Grant
Hakon Hakonarson
Children's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USCasa Sollievo della Sofferenza · ITChildren's Hospital of Wisconsin · USMedical College of Wisconsin · USPrimary Children's Hospital · USSapienza University of Rome · IT

Funding

INSTITUTIONAL CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR024134 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2006 to 2011
$70.4M
Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Kathryn Ann Wikenheiser-Brokamp · 2007 to 2026
$24.4M
VIRAL DAMAGE TO BRAIN AND NEUROMUSCULAR SYSTEMM01RR000064 · NCRR · UNIVERSITY OF UTAH · PI VISKOCHIL, DAVID H. · 1985 to 2008
$21.7M
Growth Hormone Receptor Dimerization/Disulfide LinkageR01DK058259 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FRANK, STUART J · 2001 to 2014
$3.4M
Cytokine Regulation of Growth Hormone SignalingR01DK068164 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI DENSON, LEE ARMISTEAD · 2006 to 2010
$1.4M
MUCOSAL T-CELLS IN EARLY&LATE PEDIATRIC CROHN'S DISEASEK23RR016111 · NCRR · MEDICAL COLLEGE OF WISCONSIN · PI KUGATHASAN, SUBRA · 2001 to 2005
$645k
Genetic basis of IBD susceptibility &steroid responseK23DK069513 · NIDDK · UNIVERSITY OF UTAH · PI GUTHERY, STEPHEN L · 2005 to 2008
$540k
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR011234 · NCRR · UNIVERSITY OF UTAH · PI MATSEN, JOHN M · 1995 to 1995
–
NCRR NIH HHS C06 RR011234NCRR NIH HHS K23 RR016111NCRR NIH HHS K23RR016111NCRR NIH HHS M01 RR000064NCRR NIH HHS M01-RR00064NCRR NIH HHS UL1 RR024134NCRR NIH HHS UL1-RR024134-03NIDDK NIH HHS 1P30DK078392-01NIDDK NIH HHS K23 DK069513NIDDK NIH HHS K23DK069513NIDDK NIH HHS P30 DK078392NIDDK NIH HHS R01 DK058259NIDDK NIH HHS R01 DK068164Wellcome Trust
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) is a common inflammatory disorder with complex etiology that involves both genetic and environmental triggers, including but not limited to defects in bacterial clearance, defective mucosal barrier and persistent dysregulation of the immune response to commensal intestinal bacteria. IBD is characterized by two distinct phenotypes: Crohn's disease (CD) and ulcerative colitis (UC). Previously reported GWA studies have identified genetic variation accounting for a small portion of the overall genetic susceptibility to CD and an even smaller contribution to UC pathogenesis. We hypothesized that stratification of IBD by age of onset might identify additional genes associated with IBD. To that end, we carried out a GWA analysis in a cohort of 1,011 individuals with pediatric-onset IBD and 4,250 matched controls. We identified and replicated significantly associated, previously unreported loci on chromosomes 20q13 (rs2315008[T] and rs4809330[A]; P = 6.30 x 10(-8) and 6.95 x 10(-8), respectively; odds ratio (OR) = 0.74 for both) and 21q22 (rs2836878[A]; P = 6.01 x 10(-8); OR = 0.73), located close to the TNFRSF6B and PSMG1 genes, respectively.

Indexed as

AdolescentAge of OnsetCase-Control StudiesChildChild, PreschoolChromosome MappingChromosomes, Human, Pair 20Chromosomes, Human, Pair 21Cohort StudiesFemaleGenetic LinkageGenetic Predisposition to DiseaseGenome, HumanHaplotypesHumansInfantReceptors, Tumor Necrosis Factor, Member 6bTNFRSF6B protein, human

Identifiers

PMID18758464
PMCPMC2770437
OpenAlexW2075739253

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.