ArticleApplied and environmental microbiology2008
TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets.
Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
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- Regulatory Small RNAs for a Sustained Eco-Agriculture.International journal of molecular sciences · 2023Review
- AnFrontiers in microbiology · 2022Article
- Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments.Microbial ecology · 2021Article
- The Status of Soil Microbiome as Affected by the Application of Phosphorus Biofertilizer: Fertilizer Enriched with Beneficial Bacterial Strains.International journal of molecular sciences · 2020Article
- Methodological Aspects of Multiplex Terminal Restriction Fragment Length Polymorphism-Technique to Describe the Genetic Diversity of Soil Bacteria, Archaea and Fungi.Sensors (Basel, Switzerland) · 2020Article
- Botanical microbiomes on the cheap: Inexpensive molecular fingerprinting methods to study plant-associated communities of bacteria and fungi.Applications in plant sciences · 2020Review
- Structural and functional microbial diversity of sandy soil under cropland and grassland.PeerJ · 2020Article
- Conservation and transmission of seed bacterial endophytes across generations following crossbreeding and repeated inbreeding of rice at different geographic locations.MicrobiologyOpen · 2019Article
- Influence of rewetting on microbial communities involved in nitrification and denitrification in a grassland soil after a prolonged drought period.Scientific reports · 2019Article
- Nitrogen-Fixing Bacteria Associated withMolecules (Basel, Switzerland) · 2018Article
- The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars.BMC plant biology · 2018Article
- Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture.Biodegradation · 2018Article
- Diversity and Dynamics of Microbial Community Structure in Different Mangrove, Marine and Freshwater Sediments During Anaerobic Debromination of PBDEs.Frontiers in microbiology · 2018Article
- Distribution of Sulfate-Reducing Communities from Estuarine to Marine Bay Waters.Microbial ecology · 2017Article
- Plant-microbe rhizosphere interactions mediated by Rehmannia glutinosa root exudates under consecutive monoculture.Scientific reports · 2015Article
- Microbial community analysis of switchgrass planted and unplanted soil microcosms displaying PCB dechlorination.Applied microbiology and biotechnology · 2015Article
- Diversity Profile of Microbes Associated with Anaerobic Sulfur Oxidation in an Upflow Anaerobic Sludge Blanket Reactor Treating Municipal Sewage.Microbes and environments · 2015Article
- Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps.The ISME journal · 2014Article
- Impact of swapping soils on the endophytic bacterial communities of pre-domesticated, ancient and modern maize.BMC plant biology · 2014Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We describe TRiFLe, a freely accessible computer program that generates theoretical terminal restriction fragments (T-RFs) from any user-supplied sequence set tailored to a particular group of organisms, sequences from clone libraries, or sequences from specific genes. The program allows a rapid identification of the most polymorphic enzymes, creates a collection of T-RFs for the data set, and can potentially identify specific T-RFs in T-RF length polymorphism (T-RFLP) patterns by comparing theoretical and experimental results. TRiFLE was used for analyzing T-RFLP data generated for the amoA and pmoA genes. The peaks identified in the T-RFLP patterns show an overlap of ammonia- and methane-oxidizing bacteria in the metalimnion of a subtropical lake.
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