Evidence map›Paper›PMID 18757577›Full record

ArticleApplied and environmental microbiology2008

Heme uptake by Microscilla marina and evidence for heme uptake systems in the genomes of diverse marine bacteria.

Brian M Hopkinson, Kelly L Roe, Katherine A Barbeau

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 56 citations in OpenAlex.

  1. Iron (III) emissions from seawater desalination plants: a new, hitherto overlooked contribution to the iron cycle in coastal seas?Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
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  7. Iron Uptake Mechanisms in Marine Phytoplankton.Frontiers in microbiology · 2020
    Review
  8. Phenomics and Genomics Reveal Adaptation ofFrontiers in microbiology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brian M HopkinsonGeosciences Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, USA. bhopkins@princeton.edu
Kelly L Roe
Katherine A Barbeau
University of California, San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to acquire diverse and abundant forms of iron would be expected to confer a survival advantage in the marine environment, where iron is scarce. Marine bacteria are known to use siderophores and inorganic iron, but their ability to use heme, an abundant intracellular iron form, has only been examined preliminarily. Microscilla marina, a cultured relative of a bacterial group frequently found on marine particulates, was used as a model organism to examine heme uptake. Searches of the genome revealed analogs to known heme transport proteins, and reverse transcription-quantitative PCR analysis of these genes showed that they were expressed and upregulated under iron stress and during growth on heme. M. marina was found to take up heme-bound iron and could grow on heme as a sole iron source, supporting the genetic evidence for heme transport. Similar putative heme transport components were identified in the genomes of diverse marine bacteria. These systems were found in the genomes of many bacteria thought to be particle associated but were lacking in known free-living organisms (e.g., Pelagibacter ubique and marine cyanobacteria). This distribution of transporters is consistent with the hydrophobic, light-sensitive nature of heme, suggesting that it is primarily available on phytoplankton or detritus or in nutrient-rich environments.

Indexed as

BacteriaBacterial ProteinsCytophagaceaeGene Expression ProfilingGenes, BacterialHemeIronMembrane Transport ProteinsMultigene FamilyPhylogenyReverse Transcriptase Polymerase Chain ReactionUp-RegulationWater MicrobiologyBacterial ProteinsHemeIronMembrane Transport Proteins

Identifiers

PMID18757577
PMCPMC2570271
OpenAlexW2100297933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.