Evidence map›Paper›PMID 18755201›Full record

ArticleMutation research2008

Large inverted repeats in the vicinity of a single double-strand break strongly affect repair in yeast diploids lacking Rad51.

Brandon Downing, Rachel Morgan, Kelly VanHulle, Angela Deem, Anna Malkova

Abstract read
In one paragraph

Article in Mutation research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Break-induced replication mechanisms in yeast and mammals.Current opinion in genetics & development · 2021
    Review
  6. Repair of DNA Breaks by Break-Induced Replication.Annual review of biochemistry · 2021
    Review
  7. RAD51: Beyond the break.Seminars in cell & developmental biology · 2021
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Break induced replication in eukaryotes: mechanisms, functions, and consequences.Critical reviews in biochemistry and molecular biology · 2017
    Review
  14. Chromosome position determines the success of double-strand break repair.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  15. Article
  16. Article
  17. Break-induced replication: functions and molecular mechanism.Current opinion in genetics & development · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Brandon DowningDepartment of Biology, School of Science, IUPUI, Indianapolis, IN 46202-5132, USA.
Rachel Morgan
Kelly VanHulle
Angela Deem
Anna Malkova
Indiana University – Purdue University Indianapolis · US

Funding

Recombination Mechanisms in Yeast Cell DifferentiationR37GM020056 · NIGMS · BRANDEIS UNIVERSITY · PI HABER, JAMES E · 2007 to 2016
$5.5M
RECOMBINATION MECHANISMS IN YEAST CELL DIFFERENTIATIONR01GM020056 · NIGMS · BRANDEIS UNIVERSITY · PI HABER, JAMES E · 1985 to 2006
$3.4M
Amplification of risk resulting from mis-routing of double-strand break repairR01GM084242 · NIGMS · UNIVERSITY OF IOWA · PI MALKOVA, ANNA L · 2008 to 2017
$2.7M
Mechanism of break-induced replication in yeastR15GM074657 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MALKOVA, ANNA L · 2006 to 2006
$261k
NIGMS NIH HHS 1R15GM074657NIGMS NIH HHS 3R15GM074657-01A1S1NIGMS NIH HHS GM20056NIGMS NIH HHS R01 GM020056NIGMS NIH HHS R01 GM084242NIGMS NIH HHS R15 GM074657NIGMS NIH HHS R37 GM020056
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) are critical lesions that can lead to cell death or chromosomal rearrangements. Rad51 is necessary for most mitotic and meiotic DSB repair events, although a number of RAD51-independent pathways exist. Previously, we described DSB repair in rad51Delta yeast diploids that was stimulated by a DNA region termed "facilitator of break-induced replication" (FBI) located approximately 30kb from the site of an HO-induced DSB. Here, we demonstrate that FBI is a large inverted DNA repeat that channels the repair of DSBs into the single-strand annealing-gross chromosomal rearrangements (SSA-GCR) pathway. Further, analysis of DSB repair in rad54Delta cells allowed us to propose that the SSA-GCR repair pathway is suppressed in the presence of Rad51p. Therefore, an additional role of Rad51 might be to protect eukaryotic genomes from instabilities by preventing chromosomal rearrangements.

Indexed as

DNA Breaks, Double-StrandedBase SequenceChromosomes, FungalDiploidyDNA, FungalDNA HelicasesDNA PrimersDNA RepairDNA Repair EnzymesGene ConversionGenes, FungalGenomic InstabilityInverted Repeat SequencesRad51 RecombinaseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA, FungalDNA HelicasesDNA PrimersDNA Repair EnzymesFEN2 protein, S cerevisiaeRAD51 protein, S cerevisiaeRad51 RecombinaseRAD54 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSymporters

Identifiers

PMID18755201
PMCPMC2643024
OpenAlexW2015268864

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.