Evidence map›Paper›PMID 18753295›Full record

ArticleAmerican journal of physiology. Renal physiology2008

Localization of phosphatidylinositol phosphate kinase IIgamma in kidney to a membrane trafficking compartment within specialized cells of the nephron.

Jonathan H Clarke, Piers C Emson, Robin F Irvine

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 81 citations in OpenAlex.

  1. Review
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  8. Review
  9. 25 Years of PI5P.Frontiers in cell and developmental biology · 2023
    Review
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  11. Article
  12. Review
  13. Article
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  15. Article
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  17. Review
  18. Discovery and Structure-Activity Relationship Study of (Journal of medicinal chemistry · 2020
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Jonathan H ClarkeDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK. jhc30@cam.ac.uk
Piers C Emson
Robin F Irvine
University of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust WT063581
6 · The paper itself

Abstract

PIP4Ks (type II phosphatidylinositol 4-phosphate kinases) are phosphatidylinositol 5-phosphate (PtdIns5P) 4-kinases, believed primarily to regulate cellular PtdIns5P levels. In this study, we investigated the expression, localization, and associated biological activity of the least-studied PIP4K isoform, PIP4Kgamma. Quantitative RT-PCR and in situ hybridization revealed that compared with PIP4Kalpha and PIP4Kbeta, PIP4Kgamma is expressed at exceptionally high levels in the kidney, especially the cortex and outer medulla. A specific antibody was raised to PIP4Kgamma, and immunohistochemistry with this and with antibodies to specific kidney cell markers showed a restricted expression, primarily distributed in epithelial cells in the thick ascending limb and in the intercalated cells of the collecting duct. In these cells, PIP4Kgamma had a vesicular appearance, and transfection of kidney cell lines revealed a partial Golgi localization (primarily the matrix of the cis-Golgi) with an additional presence in an unidentified vesicular compartment. In contrast to PIP4Kalpha, bacterially expressed recombinant PIP4Kgamma was completely inactive but did have the ability to associate with active PIP4Kalpha in vitro. Overall our data suggest that PIP4Kgamma may have a function in the regulation of vesicular transport in specialized kidney epithelial cells.

Indexed as

AnimalsAquaporin 1AutoantigensBlotting, WesternCell LineChlorocebus aethiopsCOS CellsGene ExpressionGolgi ApparatusHeLa CellsHumansIn Situ HybridizationIsoenzymesKidneyKidney CortexKidney MedullaAqp1 protein, mouseAquaporin 1AutoantigensGolgin subfamily A member 2IsoenzymesMembrane ProteinsMinor Histocompatibility AntigensMucoproteinsphosphatidylinositol phosphate 4-kinasePhosphotransferases (Alcohol Group Acceptor)UMOD protein, humanUmod protein, mouseUromodulin

Identifiers

PMID18753295
PMCPMC2584910
OpenAlexW2102947737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.