Evidence map›Paper›PMID 18753202›Full record

ArticleJournal of virology2008

Role of cdk9 in the optimization of expression of the genes regulated by ICP22 of herpes simplex virus 1.

Lizette Olga Durand, Bernard Roizman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 56 citations in OpenAlex.

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  20. P-TEFb goes viral.Inside the cell · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lizette Olga DurandMarjorie B Kovler Viral Oncology Laboratories, The University of Chicago, Chicago, IL 60637, USA.
Bernard Roizman
University of Chicago · US

Funding

FUNCTIONS FOR HERPES SIMPLEX VIRUS ICP22 AND US1.5R01CA083939 · NCI · UNIVERSITY OF CHICAGO · PI ROIZMAN, BERNARD · 2000 to 2009
$4.8M
NCI NIH HHS CA83939NCI NIH HHS R01 CA083939
6 · The paper itself

Abstract

ICP22 is a multifunctional herpes simplex virus 1 (HSV-1) regulatory protein that regulates the accumulation of a subset of late (gamma(2)) proteins exemplified by U(L)38, U(L)41, and U(S)11. ICP22 binds the cyclin-dependent kinase 9 (cdk9) but not cdk7, and this complex in conjunction with viral protein kinases phosphorylates the carboxyl terminus of RNA polymerase II (Pol II) in vitro. The primary function of cdk9 and its partners, the cyclin T variants, is in the elongation of RNA transcripts, although functions related to the initiation and processing of transcripts have also been reported. We report two series of experiments designed to probe the role of cdk9 in infected cells. In the first, infected cells were treated with 5,6-dichloro-1-beta-d-ribofuranosylbenzimidazole (DRB), a specific inhibitor of cdk9. In cells treated with DRB, the major effect was in the accumulation of viral RNAs and proteins regulated by ICP22. The accumulation of alpha, beta, or gamma proteins not regulated by ICP22 was not affected by the drug. The results obtained with DRB were duplicated in cells transfected with small interfering RNA (siRNA) targeting cdk9 mRNAs. Interestingly, DRB and siRNA reduced the levels of ICP22 but not those of other alpha gene products. In addition, cdk9 and ICP22 appeared to colocalize with RNA Pol II in wild-type-virus-infected cells but not in DeltaU(L)13-infected cells. We conclude that cdk9 plays a critical role in the optimization of expression of genes regulated by ICP22 and that one function of cdk9 in HSV-1-infected cells may be to bring ICP22 into the RNA Pol II transcriptional complex.

Indexed as

Gene Expression Regulation, ViralCell LineCyclin-Dependent Kinase 9DichlororibofuranosylbenzimidazoleEnzyme InhibitorsHerpesvirus 1, HumanHumansImmediate-Early ProteinsProtein BindingRNA Polymerase IIViral ProteinsCDK9 protein, humanCyclin-Dependent Kinase 9DichlororibofuranosylbenzimidazoleEnzyme InhibitorsICP22 protein, human herpesvirus 1Immediate-Early ProteinsRNA Polymerase IIViral Proteins

Identifiers

PMID18753202
PMCPMC2573194
OpenAlexW2077654557

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.