Evidence map›Paper›PMID 18729497›Full record

ArticleJournal of proteome research2008

Membrane glycoproteins associated with breast tumor cell progression identified by a lectin affinity approach.

Yanfei Wang, Xiaoping Ao, Huy Vuong, Meghana Konanur, Fred R Miller, Steve Goodison, David M Lubman

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yanfei WangDepartment of Chemistry, The University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109-1055, USA.
Xiaoping Ao
Huy Vuong
Meghana Konanur
Fred R Miller
Steve Goodison
David M Lubman
University of Michigan · US

Funding

Microsequencing in an Ion Trap/reTOF DeviceR01GM049500 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 1994 to 2016
$3.0M
Liquid Proteomics for Marker Screening of Ovarian CancerR01CA100104 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 2003 to 2007
$1.3M
Functional Analysis of metastasis-Associated ProteinsR01CA108597 · NCI · UNIVERSITY OF FLORIDA · PI GOODISON, STEVE · 2004 to 2008
$1.3M
Proteomics of Progression in MCF10 Xenograft ModelR01CA090503 · NCI · WAYNE STATE UNIVERSITY · PI MILLER, FRED RAYMOND · 2002 to 2005
$951k
NCI NIH HHS R01 CA090503NCI NIH HHS R01 CA100104NCI NIH HHS R01CA100104NCI NIH HHS R01 CA108597NCI NIH HHS R01CA108597NCI NIH HHS R01CA90503NIGMS NIH HHS R01 GM049500NIGMS NIH HHS R01GM49500
6 · The paper itself

Abstract

The membrane glycoprotein component of the cellular proteome represents a promising source for potential disease biomarkers and therapeutic targets. Here we describe the development of a method that facilitates the analysis of membrane glycoproteins and apply it to the differential analysis of breast tumor cells with distinct malignant phenotypes. The approach combines two membrane extraction procedures, and enrichment using ConA and WGA lectin affinity columns, prior to digestion and analysis by LC-MS/MS. The glycoproteins are identified and quantified by spectral counting. Although the distribution of glycoprotein expression as a function of MW and p I was very similar between the two related cell lines tested, the approach enabled the identification of several distinct membrane glycoproteins with an expression index correlated with either a precancerous (MCF10AT1), or a malignant, metastatic cellular phenotype (MCF10CA1a). Among the proteins associated with the malignant phenotype, Gamma-glutamyl hydrolase, CD44, Galectin-3-binding protein, and Syndecan-1 protein have been reported as potential biomarkers of breast cancer.

Indexed as

Breast NeoplasmsAmino Acid SequenceCell Line, TumorChromatography, AffinityFemaleHumansLectinsMass SpectrometryMembrane GlycoproteinsMolecular Sequence DataPeptidesLectinsMembrane GlycoproteinsPeptides

Identifiers

PMID18729497
PMCPMC2630886
OpenAlexW2008423542

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.