Evidence map›Paper›PMID 18724933›Full record

ArticleCell2008

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.

Artyom A Alekseyenko, Shouyong Peng, Erica Larschan, Andrey A Gorchakov, Ok-Kyung Lee, Peter Kharchenko, Sean D McGrath, Charlotte I Wang, Elaine R Mardis, Peter J Park and 1 more

Abstract read
In one paragraph

Article in Cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 178 papers.

0numbers the graph read from it
0cells of the map it votes in
178citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

178 citing papers in PubMed.

  1. Article
  2. Article
  3. Promiscuous RNA editing in lncRNARNA (New York, N.Y.) · 2025
    Article
  4. Sex-specific transcriptome dynamics ofGenes & development · 2025
    Article
  5. Article
  6. Article
  7. N-terminus ofeLife · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Sequence reliance of abioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Dosage Compensation inInternational journal of molecular sciences · 2022
    Review

118 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Artyom A AlekseyenkoHarvard-Partners Center for Genetics and Genomics, Division of Genetics, Department of Medicine, Brigham & Women's Hospital, Boston, MA 02115, USA.
Shouyong Peng
Erica Larschan
Andrey A Gorchakov
Ok-Kyung Lee
Peter Kharchenko
Sean D McGrath
Charlotte I Wang
Elaine R Mardis
Peter J Park
Mitzi I Kuroda

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Molecular Genetics of Dosage Compensation in DrosophilaR37GM045744 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI KURODA, MITZI I · 2004 to 2013
$3.7M
MOLECULAR GENETICS OF DOSAGE COMPENSATION IN DROSOPHILAR01GM045744 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI KURODA, MITZI I · 1991 to 2017
$2.3M
Statistical and Computational Studies of Microarray DataK25GM067825 · NIGMS · CHILDREN'S HOSPITAL BOSTON · PI PARK, PETER J · 2003 to 2007
$708k
NHGRI NIH HHS HG003079NHGRI NIH HHS U54 HG003079NIGMS NIH HHS GM45744NIGMS NIH HHS GM67825NIGMS NIH HHS K25 GM067825NIGMS NIH HHS R01 GM045744NIGMS NIH HHS R37 GM045744
6 · The paper itself

Abstract

The Drosophila MSL complex associates with active genes specifically on the male X chromosome to acetylate histone H4 at lysine 16 and increase expression approximately 2-fold. To date, no DNA sequence has been discovered to explain the specificity of MSL binding. We hypothesized that sequence-specific targeting occurs at "chromatin entry sites," but the majority of sites are sequence independent. Here we characterize 150 potential entry sites by ChIP-chip and ChIP-seq and discover a GA-rich MSL recognition element (MRE). The motif is only slightly enriched on the X chromosome ( approximately 2-fold), but this is doubled when considering its preferential location within or 3' to active genes (>4-fold enrichment). When inserted on an autosome, a newly identified site can direct local MSL spreading to flanking active genes. These results provide strong evidence for both sequence-dependent and -independent steps in MSL targeting of dosage compensation to the male X chromosome.

Indexed as

AnimalsBase SequenceChromatin ImmunoprecipitationDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsFemaleMaleNuclear ProteinsTranscription FactorsX ChromosomeDNA-Binding ProteinsDrosophila Proteinsmsl-2 protein, Drosophilamsl-3 protein, DrosophilaNuclear ProteinsTranscription Factors

Identifiers

PMID18724933
PMCPMC2613042

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.