Evidence map›Paper›PMID 18719403›Full record

ArticleFly

The Drosophila protein palmitoylome: characterizing palmitoyl-thioesterases and DHHC palmitoyl-transferases.

Barbra A Bannan, Jamie Van Etten, John A Kohler, Yui Tsoi, Nicole M Hansen, Stacey Sigmon, Elizabeth Fowler, Haley Buff, Tiffany S Williams, Jeffrey G Ault and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Fly. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Viruses in LaboratoryViruses · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Article
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  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Membrane targeting of inhibitory Smads through palmitoylation controls TGF-β/BMP signaling.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. The Journal of biological chemistry · 2017
    Article
  17. Protein S-palmitoylation in cellular differentiation.Biochemical Society transactions · 2017
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Barbra A BannanDepartment of Biology; College of Charleston; Charleston, South Carolina, USA.
Jamie Van Etten
John A Kohler
Yui Tsoi
Nicole M Hansen
Stacey Sigmon
Elizabeth Fowler
Haley Buff
Tiffany S Williams
Jeffrey G Ault
Robert L Glaser
Christopher A Korey
College of Charleston · USWadsworth Center · USTwin Cities Orthopedics · US

Funding

Supplement for South Carolina BRIN - 1P20 RR16461P20RR016461 · NCRR · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DEAVOR, JAMES · 2001 to 2011
$32.3M
A Drosophila model of Batten DiseaseR21NS044572 · NINDS · WADSWORTH CENTER · PI GLASER, ROBERT L · 2002 to 2004
$567k
Studying Infantile NCL in DrosophilaR15HD052362 · NICHD · COLLEGE OF CHARLESTON · PI KOREY, CHRISTOPHER A · 2006 to 2006
$211k
NCRR NIH HHS P20 RR016461NCRR NIH HHS P20-RR16461NICHD NIH HHS R15 HD052362NICHD NIH HHS R15-HD052362NINDS NIH HHS NS44572NINDS NIH HHS R21 NS044572
6 · The paper itself

Abstract

Palmitoylation is the post-translational addition of a palmitate moiety to a cysteine residue through a covalent thioester bond. The addition and removal of this modification is controlled by both palmitoyl acyl-transferases and thioesterases. Using bioinformatic analysis, we identified 22 DHHC family palmitoyl acyl-transferase homologs in the Drosophila genome. We used in situ hybridization,RT-PCR, and published FlyAtlas microarray data to characterize the expression patterns of all 22 fly homologs. Our results indicate that all are expressed genes, but several, including CG1407, CG4676, CG5620, CG6017/dHIP14, CG6618, CG6627 and CG17257 appear to be enriched in neural tissues suggesting that they are important for neural function. Furthermore, we have found that several may be expressed in a sex-specific manner with adult male specific expression of CG4483 and CG17195. Using tagged versions of the DHHC genes, we demonstrate that fly DHHC proteins are primarily located in either the Golgi Apparatus or Endoplasmic Reticulum in S2 cells, except for CG1407, which was found on the plasma membrane. We also characterized the subcellular localization and expression of the three known thioesterases: Palmitoyl-protein Thioesterase 1 (Ppt1), Palmitoyl-protein Thioesterase 2 (Ppt2)and Acyl-protein Thioesterase 1 (APT1). Our results indicate that Ppt1 and Ppt2 are the major lysosomal thioesterases while APT1 is the likely cytoplasmic thioesterase. Finally, in vivo rescue experiments show that Ppt2 expression cannot rescue the neural inclusion phenotypes associated with loss of Ppt1, further supporting distinct functions and substrates for these two thioesterases. These results will serve as the basis for a more complete understanding of the protein palmitoylome's normal cellular functions in the fly and will lead to further insights into the molecular etiology of diseases associated with the mis-regulation of palmitoylation.

Indexed as

AcyltransferasesAmino Acid MotifsAmino Acid SequenceAnimalsCell LineDrosophilaDrosophila ProteinsGenes, InsectHumansMaleMembrane ProteinsMolecular Sequence DataMultigene FamilyPalmitoyl-CoA HydrolaseThiolester HydrolasesAcyltransferasesDrosophila ProteinsMembrane ProteinsPalmitoyl-CoA Hydrolasepalmitoyl-protein thioesterasePpt1 protein, DrosophilaThiolester Hydrolases

Identifiers

PMID18719403
PMCPMC2898910
OpenAlexW2138539158

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.