Evidence map›Paper›PMID 18716897›Full record

ArticleMolecular biology reports2009

An improved design of PCR primers for detection of human T cell receptor beta chain repertoire.

Yuan Ou, Chunrong Tong, Ying Zhang, Peng Cai, Jiangying Gu, Yan Liu, Hongxing Liu, He Wang, Bin Chu, Ping Zhu

Abstract read
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In one paragraph

Article in Molecular biology reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Yuan OuDepartment of Hematology, Peking University First Hospital, Peking University, Beijing, 100034, China.
Chunrong Tong
Ying Zhang
Peng Cai
Jiangying Gu
Yan Liu
Hongxing Liu
He Wang
Bin Chu
Ping Zhu
Beijing Dao Pei Hospital · CNPeking University · CNPeking University First Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analysis of T cell receptor beta variable region (TCRBV) gene rearrangement is useful for clonal assessment of abnormal T cell proliferations in various diseases. However, most primer panels previously used can only amplify the third complementarity-determining region. Following IMGT database we established a panel of primers, which can amplify entire sequences of all functional TCRBV families. To confirm the usefulness of this panel of primers, we detected different TCRBV repertoires. In 15 healthy donors, most of the BV families were expressed and appeared as a Gaussian distribution. 13 acute myeloid leukemia patients showed monoclonal or oligoclonal changes of BV15 family, and some of them also had monoclonal or oligoclonal expansion of BV2, BV4, BV6 or BV13 families. In one patient after allo-hematopoietic stem cell transplantation, monoclonal proliferation of BV10 family occurred during graft-versus-host disease. In conclusion, this panel of primers improves our abilities to analyze TCRBV repertoire changes in related diseases.

Indexed as

DNA PrimersComplementarity Determining RegionsDatabases, GeneticElectrophoresis, CapillaryGene Rearrangement, beta-Chain T-Cell Antigen ReceptorHematopoietic Stem Cell TransplantationHumansLeukemia, Myeloid, AcuteNormal DistributionPolymerase Chain ReactionReceptors, Antigen, T-Cell, alpha-betaComplementarity Determining RegionsDNA PrimersReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID18716897
OpenAlexW2054101583

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.