Evidence map›Paper›PMID 18716612›Full record

ArticleEuropean journal of human genetics : EJHG2009

Novel SLC7A7 large rearrangements in lysinuric protein intolerance patients involving the same AluY repeat.

Mariona Font-Llitjós, Benjamín Rodríguez-Santiago, Meritxell Espino, Ruth Sillué, Sandra Mañas, Laia Gómez, Luis A Pérez-Jurado, Manuel Palacín, Virginia Nunes

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In one paragraph

Article in European journal of human genetics : EJHG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. La Tunisie medicale · 2024
    Article
  4. Article
  5. Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.Advances in experimental medicine and biology · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. InducibleInternational journal of molecular sciences · 2019
    Article
  10. Review
  11. Recent progress of porcine milk components and mammary gland function.Journal of animal science and biotechnology · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Lysinuric Protein Intolerance Presenting with Multiple Fractures.Molecular genetics and metabolism reports · 2014
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Mariona Font-LlitjósMedical and Molecular Genetics Center, IDIBELL, Hospital Duran i Reynals, L'Hospitalet de Llobregat, Barcelona, Spain. mfont@idibell.org
Benjamín Rodríguez-Santiago
Meritxell Espino
Ruth Sillué
Sandra Mañas
Laia Gómez
Luis A Pérez-Jurado
Manuel Palacín
Virginia Nunes
Institut d'Investigació Biomédica de Bellvitge · ESCentre for Biomedical Network Research on Rare Diseases · ESHebron University · PS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lysinuric protein intolerance (LPI) is a rare autosomal inherited disease caused by defective cationic aminoacid transport 4F2hc/y(+)LAT-1 at the basolateral membrane of epithelial cells in the intestine and kidney. LPI is a multisystemic disease with a variety of clinical symptoms such as hepatosplenomegaly, osteoporosis, hypotonia, developmental delay, pulmonary insufficiency or end-stage renal disease. The SLC7A7 gene, which encodes the y(+)LAT-1 protein, is mutated in LPI patients. Mutation analysis of the promoter localized in intron 1 and all exons of the SLC7A7 gene was performed in 11 patients from 9 unrelated LPI families. Point mutation screening was performed by exon direct sequencing and a new multiplex ligation probe amplification (MLPA) assay was set up for large rearrangement analysis. Eleven SLC7A7-specific mutations were identified, seven of them were novel: p.L124P, p.C425R, p.R468X, p.Y274fsX21, c.625+1G>C, DelE4-E11 and DelE6-E11. The novel large deletions originated by the recombination of Alu repeats at introns 3 and 5, respectively, with the same AluY sequence localized at the SLC7A7 3' region. The novel MLPA assay is robust and valuable for LPI molecular diagnosis. Our results suggest that genomic rearrangements of SLC7A7 play a more important role in LPI than has been reported, increasing the detection rate from 5.1 to 21.4%. Moreover, the 3' region AluY repeat could be a recombination hot spot as it is involved in 38% of all SLC7A7 rearranged chromosomes described so far.

Indexed as

Alu ElementsAdolescentAmino Acid SequenceAmino Acid Transport Disorders, InbornAmino Acid Transport System y+LChildChild, PreschoolDNA Mutational AnalysisFemaleFusion Regulatory Protein 1, Light ChainsGene RearrangementHumansIntronsLysineMalePoint MutationAmino Acid Transport System y+LFusion Regulatory Protein 1, Light ChainsLysineSLC7A7 protein, human

Identifiers

PMID18716612
PMCPMC2985956
OpenAlexW2074518794

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.