Evidence map›Paper›PMID 18713817›Full record

ArticleThe Journal of clinical endocrinology and metabolism2008

Deoxyribonucleic acid profiling analysis of 40 human thyroid cancer cell lines reveals cross-contamination resulting in cell line redundancy and misidentification.

Rebecca E Schweppe, Joshua P Klopper, Christopher Korch, Umarani Pugazhenthi, Miriam Benezra, Jeffrey A Knauf, James A Fagin, Laura A Marlow, John A Copland, Robert C Smallridge and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical endocrinology and metabolism, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 332 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
332citing papers in PubMed, 2 pooled it
23.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

332 citing papers in PubMed, 2 syntheses or guidelines pooled it, 564 citations in OpenAlex.

  1. Prevalence and Prevention of Reproducibility Deficiencies in Life Sciences Research: Large-Scale Meta-Analyses.Medical science monitor : international medical journal of experimental and clinical research · 2020
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  18. Thyroid : official journal of the American Thyroid Association · 2024
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  20. Article

272 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Rebecca E SchweppeDivision of Endocrinology, Diabetes and Metabolism, Department of Medicine and University of Colorado Cancer Center, Denver, Aurora, Colorado 80045, USA. Rebecca.Schweppe@ucdenver.edu
Joshua P Klopper
Christopher Korch
Umarani Pugazhenthi
Miriam Benezra
Jeffrey A Knauf
James A Fagin
Laura A Marlow
John A Copland
Robert C Smallridge
Bryan R Haugen
Memorial Sloan Kettering Cancer Center · USUniversity of Colorado Denver · USMayo Clinic in Florida · USUniversity of Colorado Cancer Center · USSylvester Comprehensive Cancer Center · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
MOLECULAR PATHOPHYSIOLOGY OF THYROID CELL GROWTHR01CA050706 · NCI · UNIVERSITY OF CINCINNATI · PI FAGIN, JAMES A · 1995 to 2023
$7.5M
ONCOGENIC EVENTS IN THYROID NEOPLASIAR01CA072597 · NCI · UNIVERSITY OF CINCINNATI · PI FAGIN, JAMES A · 1997 to 2020
$6.7M
Thiazolidinediones as Thyroid Cancer TherapyR01CA100560 · NCI · UNIVERSITY OF COLORADO DENVER · PI HAUGEN, BRYAN R. · 2005 to 2009
$1.6M
MOLECULAR PATHOPHYSIOLOGY OF THYROID CELL GROWTHR29CA050706 · NCI · CEDARS-SINAI MEDICAL CENTER · PI FAGIN, JAMES A · 1989 to 1993
–
NCI NIH HHS CA100560NCI NIH HHS CA50706NCI NIH HHS CA72597NCI NIH HHS P30 CA015083NCI NIH HHS P30 CA046934NCI NIH HHS P30CA15083NCI NIH HHS R01 CA050706NCI NIH HHS R01 CA072597NCI NIH HHS R01 CA100560
6 · The paper itself

Abstract

contextCell lines derived from human cancers provide critical tools to study disease mechanisms and develop novel therapies. Recent reports indicate that up to 36% of cell lines are cross- contaminated.

objectiveWe evaluated 40 reported thyroid cancer-derived cell lines using short tandem repeat and single nucleotide polymorphism array analysis.

resultsOnly 23 of 40 cell lines tested have unique genetic profiles. The following groups of cell lines are likely derivatives of the same cell line: BHP5-16, BHP17-10, BHP14-9, and NPA87; BHP2-7, BHP10-3, BHP7-13, and TPC1; KAT5, KAT10, KAT4, KAT7, KAT50, KAK1, ARO81-1, and MRO87-1; and K1 and K2. The unique cell lines include BCPAP, KTC1, TT2609-C02, FTC133, ML1, WRO82-1, 8505C, SW1736, Cal-62, T235, T238, Uhth-104, ACT-1, HTh74, KAT18, TTA1, FRO81-2, HTh7, C643, BHT101, and KTC-2. The misidentified cell lines included the DRO90-1, which matched the melanoma-derived cell line, A-375. The ARO81-1 and its derivatives matched the HT-29 colon cancer cell line, and the NPA87 and its derivatives matched the M14/MDA-MB-435S melanoma cell line. TTF-1 and Pax-8 mRNA levels were determined in the unique cell lines.

conclusionsMany of these human cell lines have been widely used in the thyroid cancer field for the past 20 yr and are not only redundant, but not of thyroid origin. These results emphasize the importance of cell line integrity, and provide the short tandem repeat profiles for a panel of thyroid cancer cell lines that can be used as a reference for comparison of cell lines from other laboratories.

Indexed as

Gene Expression ProfilingMutationPolymorphism, Single NucleotideAdenocarcinoma, FollicularCell Culture TechniquesCell Line, TumorColonic NeoplasmsDNA, NeoplasmFemaleHumansMaleMelanomaNeoplasm ProteinsReproducibility of ResultsRNA, MessengerThyroid NeoplasmsDNA, NeoplasmNeoplasm ProteinsRNA, Messenger

Identifiers

PMID18713817
PMCPMC2582569
OpenAlexW2027855079

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.