Evidence map›Paper›PMID 18713061›Full record

ArticleFoodborne pathogens and disease2008

Differential regulation of Listeria monocytogenes internalin and internalin-like genes by sigmaB and PrfA as revealed by subgenomic microarray analyses.

Patrick McGann, Sarita Raengpradub, Renata Ivanek, Martin Wiedmann, Kathryn J Boor

Abstract read
In one paragraph

Article in Foodborne pathogens and disease, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Differential Modulation of Listeria monocytogenes Fitness,Applied and environmental microbiology · 2020
    Article
  4. Review
  5. Use of omics methods for the advancement of food quality and food safety.Animal frontiers : the review magazine of animal agriculture · 2018
    Article
  6. Chitinase Expression in Listeria monocytogenes Is Influenced byApplied and environmental microbiology · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Listeria monocytogenes: survival and adaptation in the gastrointestinal tract.Frontiers in cellular and infection microbiology · 2014
    Review
  11. Article
  12. Article
  13. Article
  14. Identification and Role of Regulatory Non-Coding RNAs inInternational journal of molecular sciences · 2011
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Patrick McGannDepartment of Food Science, Cornell University, Ithaca, New York 14853, USA.
Sarita Raengpradub
Renata Ivanek
Martin Wiedmann
Kathryn J Boor
Cornell University · US

Funding

Sigma B and stress response in Listeria monocytogenesR01AI052151 · NIAID · CORNELL UNIVERSITY ITHACA · PI BOOR, KATHRYN J · 2003 to 2012
$2.7M
NIAID NIH HHS R01 AI052151NIAID NIH HHS R01-AI052151-01A1
6 · The paper itself

Abstract

The Listeria monocytogenes genome contains more than 20 genes that encode cell surface-associated internalins. To determine the contributions of the alternative sigma factor sigma(B) and the virulence gene regulator PrfA to internalin gene expression, a subgenomic microarray was designed to contain two probes for each of 24 internalin-like genes identified in the L. monocytogenes 10403S genome. Competitive microarray hybridization was performed on RNA extracted from (i) the 10403S parent strain and an isogenic Delta sigB strain; (ii) 10403S and an isogenic Delta prfA strain; (iii) a (G155S) 10403S derivative that expresses the constitutively active PrfA (PrfA*) and the Delta prfA strain; and (iv) 10403S and an isogenic Delta sigB Delta prfA strain. Sigma(B)- and PrfA-dependent transcription of selected genes was further confirmed by quantitative reverse-transcriptase polymerase chain reaction. For the 24 internalin-like genes examined, (i) both sigma(B) and PrfA contributed to transcription of inlA and inlB, (ii) only sigma(B) contributed to transcription of inlC2, inlD, lmo0331, and lmo0610; (iii) only PrfA contributed to transcription of inlC and lmo2445; and (iv) neither sigma(B) nor PrfA contributed to transcription of the remaining 16 internalin-like genes under the conditions tested.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsGene Expression ProfilingGenes, BacterialListeria monocytogenesMembrane ProteinsOligonucleotide Array Sequence AnalysisPeptide Termination FactorsReverse Transcriptase Polymerase Chain ReactionRNA, BacterialSigma FactorTranscription, GeneticBacterial ProteinsinlB protein, Listeria monocytogenesinlC protein, Listeria monocytogenesMembrane ProteinsPeptide Termination FactorsRNA, BacterialSigB protein, BacteriaSigma Factor

Identifiers

PMID18713061
PMCPMC2688707
OpenAlexW1982129699

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.