Evidence map›Paper›PMID 18710953›Full record

ArticleMolecular and cellular biology2008

Loss of the epigenetic tumor suppressor SNF5 leads to cancer without genomic instability.

Elizabeth S McKenna, Courtney G Sansam, Yoon-Jae Cho, Heidi Greulich, Julia A Evans, Christopher S Thom, Lisa A Moreau, Jaclyn A Biegel, Scott L Pomeroy, Charles W M Roberts

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 120 citations in OpenAlex.

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  15. Atypical Teratoid Rhabdoid Tumour : From Tumours to Therapies.Journal of Korean Neurosurgical Society · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Elizabeth S McKennaDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Division of Hematology/Oncology, Children's Hospital Boston, Harvard Medical School, Boston, Massachusetts 02115, USA.
Courtney G Sansam
Yoon-Jae Cho
Heidi Greulich
Julia A Evans
Christopher S Thom
Lisa A Moreau
Jaclyn A Biegel
Scott L Pomeroy
Charles W M Roberts
Dana-Farber Cancer Institute · USBoston Children's Hospital · USChildren's Hospital of Philadelphia · USHarvard University · US

Funding

THE FUNCTION OF SNF5 (SMARCB1), AN EPIGENETIC TUMOR SUPPRESSORR01CA113794 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 2005 to 2026
$7.8M
GENOMIC ANALYSIS OF MEDULLOBLASTOMASR01CA109467 · NCI · CHILDREN'S HOSPITAL BOSTON · PI MESIROV, JILL P., POMEROY, SCOTT LOREN · 2004 to 2015
$7.3M
MOLECULAR CYTOGENETICS: PEDIATRIC CNS TUMORSR01CA046274 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI BIEGEL, JACLYN A · 1989 to 2012
$2.7M
Cellular Consequences of Snf5 Tumor Suppressor LossF32CA123776 · NCI · DANA-FARBER CANCER INST · PI SANSAM, COURTNEY GREIDER · 2007 to 2009
$165k
NCI NIH HHS F32 CA123776NCI NIH HHS F32CA123776NCI NIH HHS R01 CA046274NCI NIH HHS R01 CA109467NCI NIH HHS R01CA109467NCI NIH HHS R01 CA113794NCI NIH HHS R01CA113794NCI NIH HHS R01CA46274
6 · The paper itself

Abstract

There is a growing appreciation of the role that epigenetic alterations can play in oncogenesis. However, given the large number of genetic anomalies present in most cancers, it has been difficult to evaluate the extent to which epigenetic changes contribute to cancer. SNF5 (INI1/SMARCB1/BAF47) is a tumor suppressor that regulates the epigenome as a core member of the SWI/SNF chromatin remodeling complex. While the SWI/SNF complex displays potent tumor suppressor activity, it is unknown whether this activity is exerted genetically via maintenance of genome integrity or epigenetically via transcriptional regulation. Here we show that Snf5-deficient primary cells do not show altered sensitivity to DNA damaging agents, defects in gamma-H2AX induction, or an abrogated DNA damage checkpoint. Further, the aggressive malignancies that arise following SNF5 loss are diploid and genomically stable. Remarkably, we demonstrate that most human SNF5-deficient cancers lack genomic amplifications/deletions and, aside from SNF5 loss, are indistinguishable from normal cells on single-nucleotide polymorphism arrays. Finally, we show that epigenetically based changes in transcription that occur following SNF5 loss correlate with the tumor phenotype. Collectively, our results provide novel insight into the mechanisms of oncogenesis by demonstrating that disruption of a chromatin remodeling complex can largely, if not completely, substitute for genomic instability in the genesis of aggressive cancer.

Indexed as

Epigenesis, GeneticGenomic InstabilityAnimalsCell Line, TumorChromosomal Proteins, Non-HistoneCisplatinCyclin D1DiploidyDNA-Binding ProteinsDNA DamageDNA RepairEtoposideG2 PhaseHistonesHumansMiceChromosomal Proteins, Non-HistoneCisplatinCyclin D1DNA-Binding ProteinsEtoposidegamma-H2AX protein, mouseHistonesSMARCB1 ProteinSMARCB1 protein, humanSmarcb1 protein, mouseTranscription Factors

Identifiers

PMID18710953
PMCPMC2577431
OpenAlexW2144793849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.