Evidence map›Paper›PMID 18709642›Full record

ArticleInternational journal of cancer2008

Nucleotide excision repair genes and risk of lung cancer among San Francisco Bay Area Latinos and African Americans.

Jeffrey S Chang, Margaret R Wrensch, Helen M Hansen, Jennette D Sison, Melinda C Aldrich, Charles P Quesenberry, Michael F Seldin, Karl T Kelsey, Rick A Kittles, Gabriel Silva and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of cancer, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 16 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 16 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 16 syntheses or guidelines pooled it, 74 citations in OpenAlex.

  1. Pooled it
  2. Aging · 2018
    Pooled it
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  5. Comprehensive assessment of the association between XPD rs13181 polymorphism and lung cancer risk.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  6. Genetic association between ERCC5 rs17655 polymorphism and lung cancer risk: evidence based on a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  7. Associations between polymorphisms of the XPC gene and lung cancer susceptibility: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  8. Pooled it
  9. Pooled it
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  11. A meta-analysis of evidences on XPC polymorphisms and lung cancer susceptibility.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2013
    Pooled it
  12. Pooled it
  13. Pooled it
  14. Pooled it
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  16. [The association of XPD G312A polymorphism with lung cancer risk: a meta-analysis].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2010
    Pooled it
  17. Trial
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Jeffrey S ChangDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA, USA. jeffrey.chang@ucsf.edu
Margaret R Wrensch
Helen M Hansen
Jennette D Sison
Melinda C Aldrich
Charles P Quesenberry
Michael F Seldin
Karl T Kelsey
Rick A Kittles
Gabriel Silva
John K Wiencke
University of California, San Francisco · USBrown University · USKaiser Permanente · USNeurological Surgery · USUniversity of California, Davis · USUniversity of Chicago · USUniversity of San Carlos of Guatemala · GT

Funding

BIOMARKERS OF LUNG CANCER SUSCEPTIBILITY IN MINORITIESR01ES006717 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIENCKE, JOHN K. · 1994 to 2009
$8.9M
Training in Molecular& Genetic Epidemiology of CancerR25CA112355 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2005 to 2018
$6.5M
NCI NIH HHS R25 CA112355NIEHS NIH HHS R01 ES006717NIEHS NIH HHS R01 ES06717
6 · The paper itself

Abstract

Few studies on the association between nucleotide excision repair (NER) variants and lung cancer risk have included Latinos and African Americans. We examine variants in 6 NER genes (ERCC2, ERCC4, ERCC5, LIG1, RAD23B and XPC) in association with primary lung cancer risk among 113 Latino and 255 African American subjects newly diagnosed with primary lung cancer from 1998 to 2003 in the San Francisco Bay Area and 579 healthy controls (299 Latinos and 280 African Americans). Individual single nucleotide polymorphism and haplotype analyses, multifactor dimensionality reduction (MDR) and principal components analysis (PCA) were performed to assess the association between 6 genes in the NER pathway and lung cancer risk. Among Latinos, ERCC2 haplotype CGA (rs238406, rs11878644, rs6966) was associated with reduced lung cancer risk [odds ratio (OR) of 0.65 and 95% confidence interval (CI): 0.44-0.97], especially among nonsmokers (OR = 0.29; 95% CI: 0.12-0.67). From MDR analysis, in Latinos, smoking and 3 SNPs (ERCC2 rs171140, ERCC5 rs17655 and LIG1 rs20581) together had a prediction accuracy of 67.4% (p = 0.001) for lung cancer. Among African Americans, His/His genotype of ERCC5 His1104Asp (rs17655) was associated with increased lung cancer risk (OR = 1.78; 95% CI: 1.09-2.91), and LIG1 haplotype GGGAA (rs20581, rs156641, rs3730931, rs20579 and rs439132) was associated with reduced lung cancer risk (OR = 0.61; 95% CI: 0.42-0.88). Our study suggests different elements of the NER pathway may be important in the different ethnic groups resulting either from different linkage relationship, genetic backgrounds and/or exposure histories.

Indexed as

AgedBlack or African AmericanDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA Ligase ATPDNA LigasesDNA RepairEndonucleasesFemaleHaplotypesHispanic or LatinoHumansLung NeoplasmsMaleMiddle AgedNuclear ProteinsDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA Ligase ATPDNA LigasesEndonucleasesERCC2 protein, humanLIG1 protein, humanNuclear ProteinsTranscription FactorsXeroderma Pigmentosum Group D Protein

Identifiers

PMID18709642
PMCPMC2734972
OpenAlexW1984947226

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.