Evidence map›Paper›PMID 18708561›Full record

ArticleEukaryotic cell2008

Transcriptome for photobiological hydrogen production induced by sulfur deprivation in the green alga Chlamydomonas reinhardtii.

Anh Vu Nguyen, Skye R Thomas-Hall, Alizée Malnoë, Matthew Timmins, Jan H Mussgnug, Jens Rupprecht, Olaf Kruse, Ben Hankamer, Peer M Schenk

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 137 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Molecular Mechanisms Underlying the Acclimation ofFrontiers in plant science · 2021
    Article
  8. Water oxidation by photosystem II is the primary source of electrons for sustained HProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Adaptation to life on land at high OProceedings. Biological sciences · 2019
    Article
  13. Omics Application of Bio-Hydrogen Production Through Green AlgaFrontiers in bioengineering and biotechnology · 2019
    Review
  14. A Stepwise NaHSOFrontiers in plant science · 2018
    Article
  15. Article
  16. Article
  17. Gasping for air.eLife · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Anh Vu NguyenSchool of Integrative Biology, University of Queensland, St. Lucia, Queensland 4072, Australia.
Skye R Thomas-Hall
Alizée Malnoë
Matthew Timmins
Jan H Mussgnug
Jens Rupprecht
Olaf Kruse
Ben Hankamer
Peer M Schenk
University of Queensland · AUBielefeld University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photobiological hydrogen production using microalgae is being developed into a promising clean fuel stream for the future. In this study, microarray analyses were used to obtain global expression profiles of mRNA abundance in the green alga Chlamydomonas reinhardtii at different time points before the onset and during the course of sulfur-depleted hydrogen production. These studies were followed by real-time quantitative reverse transcription-PCR and protein analyses. The present work provides new insights into photosynthesis, sulfur acquisition strategies, and carbon metabolism-related gene expression during sulfur-induced hydrogen production. A general trend toward repression of transcripts encoding photosynthetic genes was observed. In contrast to all other LHCBM genes, the abundance of the LHCBM9 transcript (encoding a major light-harvesting polypeptide) and its protein was strongly elevated throughout the experiment. This suggests a major remodeling of the photosystem II light-harvesting complex as well as an important function of LHCBM9 under sulfur starvation and photobiological hydrogen production. This paper presents the first global transcriptional analysis of C. reinhardtii before, during, and after photobiological hydrogen production under sulfur deprivation.

Indexed as

Gene Expression ProfilingPhotosynthesisAlgal ProteinsAmino AcidsChlorophytaHydrogenLight-Harvesting Protein ComplexesMolecular Sequence DataOligonucleotide Array Sequence AnalysisProtein BiosynthesisSulfurTranscription, GeneticAlgal ProteinsAmino AcidsHydrogenLight-Harvesting Protein ComplexesSulfur

Identifiers

PMID18708561
PMCPMC2583537
OpenAlexW2155718235

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.