Evidence map›Paper›PMID 18708504›Full record

ArticleJournal of bacteriology2008

Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5.

W Florian Fricke, Meredith S Wright, Angela H Lindell, Derek M Harkins, Craig Baker-Austin, Jacques Ravel, Ramunas Stepanauskas

Abstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genome characterization of a multi-drug resistantFrontiers in microbiology · 2024
    Article
  8. Article
  9. Article
  10. Characterization of Adherent-InvasiveInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. Candidatus Mycoplasma haemohominis in Human, Japan.Emerging infectious diseases · 2020
    Article
  14. Article
  15. Frontiers in microbiology · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

W Florian FrickeInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.
Meredith S Wright
Angela H Lindell
Derek M Harkins
Craig Baker-Austin
Jacques Ravel
Ramunas Stepanauskas

Funding

NIAID NIH HHS N01 AI030071
6 · The paper itself

Abstract

The increasing occurrence of multidrug-resistant pathogens of clinical and agricultural importance is a global public health concern. While antimicrobial use in human and veterinary medicine is known to contribute to the dissemination of antimicrobial resistance, the impact of microbial communities and mobile resistance genes from the environment in this process is not well understood. Isolated from an industrially polluted aquatic environment, Escherichia coli SMS-3-5 is resistant to a record number of antimicrobial compounds from all major classes, including two front-line fluoroquinolones (ciprofloxacin and moxifloxacin), and in many cases at record-high concentrations. To gain insights into antimicrobial resistance in environmental bacterial populations, the genome of E. coli SMS-3-5 was sequenced and compared to the genome sequences of other E. coli strains. In addition, selected genetic loci from E. coli SMS-3-5 predicted to be involved in antimicrobial resistance were phenotypically characterized. Using recombinant vector clones from shotgun sequencing libraries, resistance to tetracycline, streptomycin, and sulfonamide/trimethoprim was assigned to a single mosaic region on a 130-kb plasmid (pSMS35_130). The remaining plasmid backbone showed similarity to virulence plasmids from avian-pathogenic E. coli (APEC) strains. Individual resistance gene cassettes from pSMS35_130 are conserved among resistant bacterial isolates from multiple phylogenetic and geographic sources. Resistance to quinolones was assigned to several chromosomal loci, mostly encoding transport systems that are also present in susceptible E. coli isolates. Antimicrobial resistance in E. coli SMS-3-5 is therefore dependent both on determinants acquired from a mobile gene pool that is likely available to clinical and agricultural pathogens, as well, and on specifically adapted multidrug efflux systems. The association of antimicrobial resistance with APEC virulence genes on pSMS35_130 highlights the risk of promoting the spread of virulence through the extensive use of antibiotics.

Indexed as

Chromosomes, BacterialDrug Resistance, Multiple, BacterialGenome, BacterialPlasmidsAnti-Bacterial AgentsDNA, BacterialEnvironmental MicrobiologyEscherichia coliEscherichia coli ProteinsGenes, BacterialInterspersed Repetitive SequencesMicrobial Sensitivity TestsMolecular Sequence DataPhylogenySequence Analysis, DNASequence Homology, Amino AcidAnti-Bacterial AgentsDNA, BacterialEscherichia coli ProteinsVirulence Factors

Identifiers

PMID18708504
PMCPMC2566207

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.