Evidence map›Paper›PMID 18708368›Full record

ArticleMolecular cancer research : MCR2008

The multifunctional protein glyceraldehyde-3-phosphate dehydrogenase is both regulated and controls colony-stimulating factor-1 messenger RNA stability in ovarian cancer.

Yi Zhou, Xiaofang Yi, Jha'nae B Stoffer, Nathalie Bonafe, Maureen Gilmore-Hebert, Jessica McAlpine, Setsuko K Chambers

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 105 citations in OpenAlex.

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  14. Metabolic signaling in T cells.Cell research · 2020
    Review
  15. IDH1 fine-tunes cap-dependent translation initiation.Journal of molecular cell biology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yi ZhouArizona Cancer Center, University of Arizona, P.O. Box 245024, Tucson, AZ 85724-5024, USA.
Xiaofang Yi
Jha'nae B Stoffer
Nathalie Bonafe
Maureen Gilmore-Hebert
Jessica McAlpine
Setsuko K Chambers
University of Arizona · USYale University · USUniversity of British Columbia · CA

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 1985 to 2026
$110.2M
REGULATION OF CSF 1 AND UROKINASE IN OVARIAN CANCERR29CA060665 · NCI · YALE UNIVERSITY · PI CHAMBERS, SETSUKO KUKI · 1995 to 1999
–
CONTEMPORARY APPROACHES TO OVARIAN CANCERR55CA060665 · NCI · YALE UNIVERSITY · PI CHAMBERS, SETSUKO KUKI · 1993 to 1993
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NCI NIH HHS NIH CA2304NCI NIH HHS NIH CA60665NCI NIH HHS P30 CA023074NCI NIH HHS R29 CA060665
6 · The paper itself

Abstract

Although glyceraldehyde-3-phosphate dehydrogenase's (GAPDH) predilection for AU-rich elements has long been known, the expected connection between GAPDH and control of mRNA stability has never been made. Recently, we described GAPDH binding the AU-rich terminal 144 nt of the colony-stimulating factor-1 (CSF-1) 3' untranslated region (UTR), which we showed to be an mRNA decay element in ovarian cancer cells. CSF-1 is strongly correlated with the poor prognosis of patients with ovarian cancer. We investigated the functional significance of GAPDH's association with CSF-1 mRNA and found that GAPDH small interfering RNA reduces both CSF-1 mRNA and protein levels by destabilizing CSF-1 mRNA. CSF-1 mRNA half-lives were decreased by 50% in the presence of GAPDH small interfering RNA. RNA footprinting analysis of the 144 nt CSF-1 sequence revealed that GAPDH associates with a large AU-rich-containing region. The effects of binding of GAPDH protein or ovarian extracts to mutations of the AU-rich regions within the footprint were consistent with this finding. In a tissue array containing 256 ovarian and fallopian tube cancer specimens, we found that GAPDH was regulated in these cancers, with almost 50% of specimens having no GAPDH staining. Furthermore, we found that low GAPDH staining was associated with a low CSF-1 score (P = 0.008). In summary, GAPDH, a multifunctional protein, now adds regulation of mRNA stability to its repertoire. We are the first to evaluate the clinical role of GAPDH protein in cancer. In ovarian cancers, we show that GAPDH expression is regulated, and we now recognize that one of the many functions of GAPDH is to promote mRNA stability of CSF-1, an important cytokine in tumor progression.

Indexed as

RNA Stability3' Untranslated RegionsBase SequenceCell Line, TumorDown-RegulationFemaleGene Expression Regulation, NeoplasticGlyceraldehyde-3-Phosphate DehydrogenasesHumansImmunohistochemistryMacrophage Colony-Stimulating FactorNucleic Acid ConformationOvarian NeoplasmsProtein BindingRNA InterferenceRNA, Neoplasm3' Untranslated RegionsGlyceraldehyde-3-Phosphate DehydrogenasesMacrophage Colony-Stimulating FactorRNA, NeoplasmRNA, Small Interfering

Identifiers

PMID18708368
PMCPMC2587019
OpenAlexW2138284475

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.