Evidence map›Paper›PMID 18708173›Full record

ArticleBiochimica et biophysica acta2008

PDX-1 interaction and regulation of the Pancreatic Derived Factor (PANDER, FAM3B) promoter.

Brant R Burkhardt, Joshua R Cook, Robert A Young, Bryan A Wolf

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Cytokines in the Progression of Pancreatic β-Cell Dysfunction.International journal of endocrinology · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Brant R BurkhardtDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, 3615 Civic Center Boulevard, Philadelphia, PA 19104-4318, USA. burkhardtb@email.chop.edu
Joshua R Cook
Robert A Young
Bryan A Wolf
University of Pennsylvania · USChildren's Hospital of Philadelphia · US

Funding

Mechanism of PANDER Induced ApoptosisK01DK070744 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI BURKHARDT, BRANT ROGER · 2006 to 2010
$670k
NIDDK NIH HHS K01 DK 070744NIDDK NIH HHS K01 DK070744
6 · The paper itself

Abstract

Pancreatic Derived Factor (PANDER) is a novel cytokine-like protein dominantly expressed within the endocrine pancreas. Our previous study demonstrated that the PANDER promoter was both tissue-specific and glucose-responsive. Surrounding the PANDER transcriptional start site are several putative A- and E-Box elements that may bind to the various pancreatic transcriptional factors of MafA, BETA2/NeuroD, and Pancreatic Duodenal Homeobox-1 (PDX-1). To characterize the transcriptional regulatory factors involved in PANDER gene expression, we performed co-transfection reporter gene analysis and demonstrated upregulation by all three transcription factors, with the greatest individual increase stemming from PDX-1. Potential binding of PDX-1 to A box (TAAT) regions of the PANDER promoter was demonstrated by chromatin immunoprecipitation (ChIP) and further corroborated by electrophoretic mobility shift assay (EMSA). Binding of PDX-1 to the A box regions was inhibited by mutagenized (TAGT) oligonucleotides. Site-directed mutagenesis of the three PDX-1 A box binding motifs revealed that A box sites 2 and 3 in combination were critical for maximal gene expression and deletion resulted in a 82% reduction in promoter activity. Furthermore, deletion of A box sites 2 and 3 completely diminished the glucose-responsiveness of the PANDER promoter. Our findings demonstrate that PANDER is a potential PDX-1 target gene and the A box sites within the promoter region are critical for basal and glucose-stimulated PANDER expression.

Indexed as

Gene Expression RegulationPromoter Regions, GeneticAnimalsBinding SitesCytokinesGlucoseHomeodomain ProteinsInsulin-Secreting CellsMiceMutagenesis, Site-DirectedNIH 3T3 CellsOrgan SpecificityProtein BindingProtein Structure, TertiaryTrans-ActivatorsTumor Cells, CulturedCytokinesGlucoseHomeodomain Proteinspancreatic and duodenal homeobox 1 proteinPANDER protein, mouseTrans-Activators

Identifiers

PMID18708173
PMCPMC2574553
OpenAlexW1988194560

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.