Evidence map›Paper›PMID 18703793›Full record

ArticleAmerican journal of respiratory cell and molecular biology2009

Differential gene expression in human conducting airway surface epithelia and submucosal glands.

Anthony J Fischer, Kelli L Goss, Todd E Scheetz, Christine L Wohlford-Lenane, Jeanne M Snyder, Paul B McCray

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Stem Cell-derived Respiratory Epithelial Cell Cultures as Human Disease Models.American journal of respiratory cell and molecular biology · 2021
    Review
  8. Secretory Cells Dominate Airway CFTR Expression and Function in Human Airway Superficial Epithelia.American journal of respiratory and critical care medicine · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Endotracheal tube mucus as a source of airway mucus for rheological study.American journal of physiology. Lung cellular and molecular physiology · 2019
    Article
  13. Oncology letters · 2018
    Article
  14. A Novel Tobacco Use Phenotype Suggests the 15q25 and 19q13 Loci May be Differentially Associated With Cigarettes per Day and Tobacco-Related Problems.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2017
    Article
  15. Development of glandular models from human nasal progenitor cells.American journal of respiratory cell and molecular biology · 2015
    Article
  16. Article
  17. Human bronchial epithelial cells differentiate to 3D glandular acini on basement membrane matrix.American journal of respiratory cell and molecular biology · 2011
    Article
  18. In vivo function of airway epithelial TLR2 in host defense against bacterial infection.American journal of physiology. Lung cellular and molecular physiology · 2011
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Anthony J FischerDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Kelli L Goss
Todd E Scheetz
Christine L Wohlford-Lenane
Jeanne M Snyder
Paul B McCray
Pediatrics and Genetics · USUniversity of Iowa · USInstitute of Cell Biology and Neurobiology · IT

Funding

Vector CoreP01HL051670 · NHLBI · UNIVERSITY OF IOWA · PI MCCRAY, PAUL B · 1993 to 2019
$36.5M
Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
THE ROLE OF INSULIN IN HUMAN FETAL LUNG DEVELOPMENTR01HL050050 · NHLBI · UNIVERSITY OF IOWA · PI SNYDER, JEANNE MARIE · 1995 to 2004
$914k
VIRAL RESPIRATORY PATHOGENS RESEARCH UNIT /VRPRU/-266030040-266030040N01AI030040 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2003 to 2006
–
NHLBI NIH HHS HL-51670NHLBI NIH HHS P01 HL051670NHLBI NIH HHS R01 HL-50050NIAID NIH HHS N01 AI-30040NIDDK NIH HHS P30 DK054759NIDDK NIH HHS P30 DK-54759NIGMS NIH HHS T32 GM007337
6 · The paper itself

Abstract

Human conducting airways contain two anatomically distinct epithelial cell compartments: surface epithelium and submucosal glands (SMG). Surface epithelial cells interface directly with the environment and function in pathogen detection, fluid and electrolyte transport, and mucus elevation. SMG secrete antimicrobial molecules and most of the airway surface fluid. Despite the unique functional roles of surface epithelia and SMG, little is known about the differences in gene expression and cellular metabolism that orchestrate the specialized functions of these epithelial compartments. To approach this problem, we performed large-scale transcript profiling using epithelial cell samples obtained by laser capture microdissection (LCM) of human bronchus specimens. We found that SMG expressed high levels of many transcripts encoding known or putative innate immune factors, including lactoferrin, zinc alpha-2 glycoprotein, and proline-rich protein 4. By contrast, surface epithelial cells expressed high levels of genes involved in basic nutrient catabolism, xenobiotic clearance, and ciliated structure assembly. Selected confirmation of differentially expressed genes in surface and SMG epithelia demonstrated the predictive power of this approach in identifying genes with localized tissue expression. To characterize metabolic differences between surface epithelial cells and SMG, immunostaining for a mitochondrial marker (isocitrate dehydrogenase) was performed. Because greater staining was observed in the surface compartment, we predict that these cells use significantly more energy than SMG cells. This study illustrates the power of LCM in defining the roles of specific anatomic features in airway biology and may be useful in examining how disease states alter transcriptional programs in the conducting airways.

Indexed as

AdipokinesAdolescentAdultCarrier ProteinsChildEpithelial CellsExocrine GlandsFemaleGene Expression ProfilingGene Expression RegulationGlycoproteinsHumansImmunity, InnateLactoferrinMaleMicrodissectionAdipokinesAZGP1 protein, humanCarrier ProteinsGlycoproteinsLactoferrinZn-Alpha-2-Glycoprotein

Identifiers

PMID18703793
PMCPMC2633141
OpenAlexW2001792811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.