Evidence map›Paper›PMID 18703680›Full record

ArticleGenes & development2008

TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription.

Jer-Yuan Hsu, Tamar Juven-Gershon, Michael T Marr, Kevin J Wright, Robert Tjian, James T Kadonaga

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 77 citations in OpenAlex.

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  11. The Core Promoter Is a Regulatory Hub for Developmental Gene Expression.Frontiers in cell and developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jer-Yuan HsuSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
Tamar Juven-Gershon
Michael T Marr
Kevin J Wright
Robert Tjian
James T Kadonaga
University of California, San Diego · USHoward Hughes Medical Institute · USBrandeis University · US

Funding

MECHANISMS OF TRANSCRIPTIONAL REGULATION IN EUKARYOTESR01GM041249 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KADONAGA, JAMES T. · 1989 to 2016
$5.4M
NIGMS NIH HHS GM041249NIGMS NIH HHS R01 GM041249
6 · The paper itself

Abstract

The RNA polymerase II core promoter is a structurally and functionally diverse transcriptional module. RNAi depletion and overexpression experiments revealed a genetic circuit that controls the balance of transcription from two core promoter motifs, the TATA box and the downstream core promoter element (DPE). In this circuit, TBP activates TATA-dependent transcription and represses DPE-dependent transcription, whereas Mot1 and NC2 block TBP function and thus repress TATA-dependent transcription and activate DPE-dependent transcription. This regulatory circuit is likely to be one means by which biological networks can transmit transcriptional signals, such as those from DPE-specific and TATA-specific enhancers, via distinct pathways.

Indexed as

TATA BoxTranscription, GeneticAnimalsCells, CulturedDrosophilaDrosophila ProteinsEnhancer Elements, GeneticGene Expression RegulationPromoter Regions, GeneticRNA Polymerase IITATA-Box Binding ProteinTranscription FactorsDrosophila ProteinsRNA Polymerase IITATA-Box Binding ProteinTranscription Factors

Identifiers

PMID18703680
PMCPMC2532932
OpenAlexW2108712717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.