Evidence map›Paper›PMID 18701881›Full record

ArticleEuropean journal of human genetics : EJHG2009

A novel missense RAG-1 mutation results in T-B-NK+ SCID in Athabascan-speaking Dine Indians from the Canadian Northwest Territories.

Zheng Xiao, Steven M Yannone, Elizabeth Dunn, Morton J Cowan

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
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  8. Article
  9. Radiosensitive severe combined immunodeficiency disease.Immunology and allergy clinics of North America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zheng XiaoPediatric Bone Marrow Transplant Division, University of California San Francisco Children's Hospital, San Francisco, CA 94143-1278, USA.
Steven M Yannone
Elizabeth Dunn
Morton J Cowan
UCSF Benioff Children's Hospital · USLawrence Berkeley National Laboratory · US

Funding

Structural Biochemistry of RecQ Helicase InteractionsR01CA104660 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI TAINER, JOHN A. · 2004 to 2008
$1.6M
TOLERANCE POST IN UTERO TRANSPLANTATIONR01HL058842 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI COWAN, MORTON · 1998 to 2005
$1.2M
NCI NIH HHS CA104660NCI NIH HHS R01 CA104660NHLBI NIH HHS 5 R01 HL058842-07NHLBI NIH HHS R01 HL058842
6 · The paper itself

Abstract

DNA double-strand repair factors in the non-homologous end joining (NHEJ) pathway resolve DNA double-strand breaks introduced by the recombination-activating gene (RAG) proteins during V(D)J recombination of T and B lymphocyte receptor genes. Defective NHEJ and subsequent failure of V(D)J recombination leads to severe combined immunodeficiency disease (SCID). We originally linked T(-)B(-)NK(+) SCID in Athabascan-speaking Native Americans in the Southwestern US and Northwest Territories of Canada to chromosome 10. However, despite a common ancestry, the null mutation in the Artemis gene that we found to be causal in the SCID among the Navajo and Apache Indians was not present in the Dine Indians in the Northwest Territories. We now report a novel homozygous missense mutation (R776W) in RAG-1 in three children with T(-)B(-)NK(+) SCID from two related families of Athabascan-speaking Dine Indians in the Canadian Northwest Territories. As expected, we found no increased sensitivity to ionizing radiation in patient fibroblasts. The impaired activity of this RAG-1 mutant in V(D)J recombination was confirmed by the EGFP-based V(D)J recombination assays. Overexpression of wild type RAG-1 in patient fibroblasts complemented V(D)J recombination, with recovery of both coding and signal joint formation. Our results indicate that the novel R776W missense mutation in RAG-1 is causal in the T(-)B(-)NK(+) SCID phenotype in Athabascan-speaking Dine Indians from the Canadian Northwest Territories.

Indexed as

Genes, RAG-1CanadaDNA RepairFemaleHomeodomain ProteinsHumansIndians, North AmericanMaleMutation, MissenseSevere Combined ImmunodeficiencyVDJ RecombinasesHomeodomain ProteinsRAG-1 proteinVDJ Recombinases

Identifiers

PMID18701881
PMCPMC2986061
OpenAlexW1997812595

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.