Evidence map›Paper›PMID 18698046›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2008

C19orf48 encodes a minor histocompatibility antigen recognized by CD8+ cytotoxic T cells from renal cell carcinoma patients.

Scott S Tykodi, Nobuharu Fujii, Nathalie Vigneron, Sharon M Lu, Jeffrey K Mito, Maureen X Miranda, Jeffrey Chou, Lilien N Voong, John A Thompson, Brenda M Sandmaier and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

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  7. Understanding small ORF diversity through a comprehensive transcription feature classification.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021
    Review
  8. Review
  9. Rapid Multiplex Genotyping of 20 HLA-AFrontiers in immunology · 2019
    Article
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  15. Review
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  20. Association of disparities in known minor histocompatibility antigens with relapse-free survival and graft-versus-host disease after allogeneic stem cell transplantation.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Scott S TykodiProgram in Immunology, Fred Hutchinson Cancer Research Center.
Nobuharu Fujii
Nathalie Vigneron
Sharon M Lu
Jeffrey K Mito
Maureen X Miranda
Jeffrey Chou
Lilien N Voong
John A Thompson
Brenda M Sandmaier
Peter Cresswell
Benoît Van den Eynde
Stanley R Riddell
Edus H Warren
Cancer Research Center · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAYale University · USFred Hutch Cancer Center · USUCLouvain · BE

Funding

Project 3: Stem Cell Allografts for Lymphoid MalignanciesP01CA078902 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SANDMAIER, BRENDA MARIE · 1999 to 2025
$46.1M
Allogeneic T Cell Responses Against Renal Cell CarcinomaR01CA106512 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI WARREN, EDUS HOUSTON · 2004 to 2008
$1.5M
Targeting Novel T Cell Antigens on Renal Cell CarcinomaK08CA121912 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TYKODI, SCOTT S · 2006 to 2010
$672k
NCI NIH HHS CA106512NCI NIH HHS CA121912NCI NIH HHS CA78902NCI NIH HHS K08 CA121912NCI NIH HHS P01 CA078902NCI NIH HHS R01 CA106512
6 · The paper itself

Abstract

purposeTumor regression has been observed in some patients with metastatic renal cell carcinoma (RCC) after nonmyeloablative allogeneic hematopoietic cell transplantation (HCT). Cellular and molecular characterization of antigens recognized by tumor-reactive T cells isolated from responding patients could potentially provide insight into the mechanisms of tumor regression. EXPERIMENTAL

designCD8+ CTL clones that recognized a novel RCC-associated minor histocompatibility (H) antigen presented by HLA-A*0201 were isolated from two patients with metastatic RCC who experienced tumor regression or stable disease following nonmyeloablative allogeneic HCT. These clones were used to screen a cDNA library and isolate the unique cDNA encoding the antigen.

resultsAn alternative open reading frame in the C19orf48 gene located on chromosome 19q13 encodes the HLA-A*0201-restricted minor H antigen recognized by the RCC-reactive T cells. The differential T-cell recognition of donor- and recipient-derived target cells is attributable to a nonsynonymous single-nucleotide polymorphism within the nucleotide interval that encodes the antigenic peptide. Assays for gene expression and CTL recognition showed that the C19orf48-encoded peptide is widely expressed in renal tumors and solid tumors of other histologies. The antigenic peptide can be processed for CTL recognition via both TAP-dependent and TAP-independent pathways.

conclusionsDonor T-cell responses against the HLA-A*0201-restricted minor H antigen encoded by C19orf48 may contribute to RCC regression after MHC-matched allogeneic HCT.

Indexed as

Antigens, NeoplasmBase SequenceCarcinoma, Renal CellCD8-Positive T-LymphocytesCell Line, TumorChromosomes, Human, Pair 19Epitopes, T-LymphocyteGene LibraryHematopoietic Stem Cell TransplantationHLA-A2 AntigenHLA-A AntigensHumansKidney NeoplasmsMinor Histocompatibility AntigensMolecular Sequence DataPolymorphism, Single NucleotideAntigens, NeoplasmEpitopes, T-LymphocyteHLA-A*02:01 antigenHLA-A2 AntigenHLA-A AntigensMinor Histocompatibility Antigens

Identifiers

PMID18698046
PMCPMC2693478
OpenAlexW2124404065

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.