Evidence map›Paper›PMID 18696364›Full record

ArticleNucleosides, nucleotides & nucleic acids2008

In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification.

B J Boese, K Corbino, R R Breaker

Abstract read
In one paragraph

Article in Nucleosides, nucleotides & nucleic acids, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Selection of Plastic-Binding DNA Aptamers for Microplastics Detection.Angewandte Chemie (International ed. in English) · 2024
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Bioactive paper provides a low-cost platform for diagnostics.Trends in analytical chemistry : TRAC · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

B J BoeseDepartment of Chemical Engineering, Yale University, New Haven, Connecticut 06520-8103, USA.
K Corbino
R R Breaker
Yale University · US

Funding

Measuring Metabolites using Riboswitch reports(RMI)R33DK070270 · NIDDK · YALE UNIVERSITY · PI BREAKER, RONALD R · 2005 to 2006
$1.3M
ENGINEERING ALLOSTERIC RIBOZYMES AND DEOXYRIBOZYMESR01GM059343 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1999 to 2002
$662k
NHLBI PROTEOMICS INITIATIVE-N01HV28186N01HV028186 · HV · YALE UNIVERSITY · PI WILLIAMS, KENNETH · 2002 to 2006
–
Howard Hughes Medical InstituteNHLBI NIH HHS HV28186NHLBI NIH HHS N01 HV028186NIDDK NIH HHS DK070270NIDDK NIH HHS R33 DK070270NIGMS NIH HHS R01 GM059343
6 · The paper itself

Abstract

We sought to create new cellulose-binding RNA aptamers for use as modular components in the engineering of complex functional nucleic acids. We designed our in vitro selection strategy to incorporate self-sustained sequence replication (3SR), which is an isothermal nucleic acid amplification protocol that allows for the rapid amplification of RNAs with little manipulation. The best performing aptamer representative was chosen for reselection and further optimization. The aptamer exhibits robust binding of cellulose in both the powdered and paper form, but did not show any significant binding of closely related polysaccharides. The minimal cellulose-binding RNA aptamer also can be grafted onto other RNAs to permit the isolation of RNAs from complex biochemical mixtures via cellulose affinity chromatography. This was demonstrated by fusing the aptamer to a glmS ribozyme sequence, and selectively eluting ribozyme cleavage products from cellulose using glucosamine 6-phosphate to activate glmS ribozyme function.

Indexed as

Aptamers, NucleotideBase SequenceCelluloseChemical EngineeringChromatography, AffinityIn Vitro TechniquesMolecular Sequence DataNucleic Acid Amplification TechniquesOligonucleotidesRNA, CatalyticAptamers, NucleotideCelluloseOligonucleotidesRNA, Catalytic

Identifiers

PMID18696364
PMCPMC5360192
OpenAlexW2084579174

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.