Evidence map›Paper›PMID 18695675›Full record

ArticleOncogene2008

Functional long-range interactions of the IgH 3' enhancers with the bcl-2 promoter region in t(14;18) lymphoma cells.

H Duan, H Xiang, L Ma, L M Boxer

Open access · bronzeAbstract read
In one paragraph

Article in Oncogene, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Mouse Models ofFrontiers in immunology · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Mouse model of endemic Burkitt translocations reveals the long-range boundaries of Ig-mediated oncogene deregulation.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

H DuanCenter for Molecular Biology in Medicine, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA, USA.
H Xiang
L Ma
L M Boxer
VA Palo Alto Health Care System · USStanford University · US

Funding

ACTIVATION OF BCL-2 IN HEMATOLOGIC MALIGNANCIESR01CA056764 · NCI · STANFORD UNIVERSITY · PI BOXER, LINDA M · 1993 to 2012
$3.3M
Activation of BCL-2 in Hematologic MalgnanciesR56CA056764 · NCI · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI BOXER, LINDA M · 2007 to 2007
$295k
NCI NIH HHS CA56764NCI NIH HHS R01 CA056764NCI NIH HHS R56 CA056764
6 · The paper itself

Abstract

To better understand the mechanisms underlying the role of the immunoglobulin heavy-chain gene (IgH) 3' enhancers on bcl-2 transcriptional deregulation in t(14;18) lymphoma, we characterized the physical interactions of the IgH 3' enhancer region with the bcl-2 promoters. Using the chromosome conformation capture technique, we found that the IgH 3' enhancers physically interact with the bcl-2 promoter region over a 350 kb genomic region in t(14;18) lymphoma cells. No interactions of the bcl-2 promoter region with sequences distant to the IgH enhancers were observed. The physical interactions of the IgH enhancers with the bcl-2 5' region are functionally involved in the transcriptional control of bcl-2. The histone deacetylase inhibitor, trichostatin A, repressed bcl-2 transcription and decreased the IgH enhancer-bcl-2 promoter region interactions. We showed by chromatin immunoprecipitation assay and small interference RNA transfection studies that the POU2 family transcription factor Oct-2 and its cofactor Bob-1 have an important function in mediating the IgH enhancer-bcl-2 promoter region interactions. This study reveals a new aspect of the regulatory role of the IgH 3' enhancers on bcl-2 transcription in t(14;18) lymphomas.

Indexed as

Cell Line, TumorChromosomes, Human, Pair 14Chromosomes, Human, Pair 18Enhancer Elements, GeneticEnzyme InhibitorsGenes, bcl-2Histone Deacetylase InhibitorsHistone DeacetylasesHumansHydroxamic AcidsImmunoglobulin Heavy ChainsLymphomaOctamer Transcription Factor-2Promoter Regions, GeneticRNA, Small InterferingTrans-ActivatorsEnzyme InhibitorsHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsImmunoglobulin Heavy ChainsOctamer Transcription Factor-2POU2AF1 protein, humanRNA, Small InterferingTrans-Activatorstrichostatin A

Identifiers

PMID18695675
PMCPMC2613909
OpenAlexW2027325467

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.