Evidence map›Paper›PMID 18695225›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

The replicative DNA polymerase of herpes simplex virus 1 exhibits apurinic/apyrimidinic and 5'-deoxyribose phosphate lyase activities.

Federica Bogani, Paul E Boehmer

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural and Functional Insights into UDGs.Protein and peptide letters · 2025
    Review
  4. Article
  5. Article
  6. Herpes simplex viruses: mechanisms of DNA replication.Cold Spring Harbor perspectives in biology · 2012
    Review
  7. Targeting DNA polymerase ß for therapeutic intervention.Current molecular pharmacology · 2012
    Review
  8. Article
  9. Replication and recombination of herpes simplex virus DNA.The Journal of biological chemistry · 2011
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Federica BoganiDepartment of Basic Medical Sciences, University of Arizona College of Medicine, 425 North 5th Street, Phoenix, AZ 85004-2157, USA.
Paul E Boehmer
University of Arizona · US

Funding

MOLECULAR EVENTS AT THE HSV-1 ORIGIN OF DNA REPLICATIONR01GM062643 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BOEHMER, PAUL E · 2000 to 2010
$2.2M
NIGMS NIH HHS GM62643NIGMS NIH HHS R01 GM062643
6 · The paper itself

Abstract

Base excision repair (BER) is essential for maintaining genome stability both to counter the accumulation of unusual bases and to protect from base loss in the DNA. Herpes simplex virus 1 (HSV-1) is a large dsDNA virus that encodes its own DNA replication machinery, including enzymes involved in nucleotide metabolism. We report on a replicative family B and a herpesvirus-encoded DNA Pol that possesses DNA lyase activity. We have discovered that the catalytic subunit of the HSV-1 DNA polymerase (Pol) (UL30) exhibits apurinic/apyrimidinic (AP) and 5'-deoxyribose phosphate (dRP) lyase activities. These activities are integral to BER and lead to DNA cleavage on the 3' side of abasic sites and 5'-dRP residues that remain after cleavage by 5'-AP endonuclease. The UL30-catalyzed reaction occurs independently of divalent cation and proceeds via a Schiff base intermediate, indicating that it occurs via a lyase mechanism. Partial proteolysis of the Schiff base shows that the DNA lyase activity resides in the Pol domain of UL30. These observations together with the presence of a virus-encoded uracil DNA glycosylase indicates that HSV-1 has the capacity to perform critical steps in BER. These findings have implications on the role of BER in viral genome maintenance during lytic replication and reactivation from latency.

Indexed as

AnimalsCell LineDNA-Directed DNA PolymeraseDNA ReplicationDNA, ViralExodeoxyribonucleasesHerpesvirus 1, HumanKineticsPhosphorus-Oxygen LyasesPolynucleotidesRibosemonophosphatesSpodopteraViral Proteins5'-deoxyribose-5-phosphate5'-deoxyribose phosphate lyaseDNA-Directed DNA PolymeraseDNA polymerase, SimplexvirusDNA, ViralExodeoxyribonucleasesPhosphorus-Oxygen LyasesPolynucleotidesRibosemonophosphatesViral Proteins

Identifiers

PMID18695225
PMCPMC2575316
OpenAlexW2055412582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.