Evidence map›Paper›PMID 18693957›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2007

Identifying mismatches in alignments of large anatomical ontologies.

Songmao Zhang, Olivier Bodenreider

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. An analysis of FMA using structural self-bisimilarity.Journal of biomedical informatics · 2013
    Article
  4. Identifying Granularity Differences between Large Biomedical Ontologies through Rules.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Songmao ZhangInstitute of Mathematics, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, P. R. China. Smzhang@math.ac.cn
Olivier Bodenreider

Funding

Intramural NIH HHS Z99 LM999999
6 · The paper itself

Abstract

unlabelledThe objective of this study is to propose a model of matching errors for identifying mismatches in alignments of large anatomical ontologies. Meth-ods: Three approaches to identifying mismatches are utilized: 1) lexical, based on the presence of modifiers in the names of the concepts aligned; 2) structural, identifying conflicting relations resulting from the alignment; and 3) semantic, based on disjoint top-level categories across ontologies.

results83% of the potential mismatches identified by the HMatch system are identified by at least one of the approaches.

conclusionsAlthough not a substitute for a careful validation of the matches, these approaches significantly reduce the need for manual validation by effectively characterizing most mismatches.

Indexed as

Natural Language ProcessingVocabulary, ControlledAnatomyHumansSemantics

Identifiers

PMID18693957
PMCPMC2655858

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.