Evidence map›Paper›PMID 18690041›Full record

ArticleChannels (Austin, Tex.)

Docking of mu-conotoxin GIIIA in the sodium channel outer vestibule.

Gaurav Choudhary, Marcela P Aliste, D Peter Tieleman, Robert J French, Samuel C Dudley

Open access · goldAbstract read
In one paragraph

Article in Channels (Austin, Tex.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. In Silico Conotoxin Studies: Progress and Prospects.Molecules (Basel, Switzerland) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Gaurav ChoudharyDepartment of Medicine, Providence Veterans Affairs Medical Center/Brown University, Providence, Rhode Island 02904, USA. Gaurav_Choudhary@brown.edu
Marcela P Aliste
D Peter Tieleman
Robert J French
Samuel C Dudley
Providence VA Medical Center · USUniversity of Calgary · CAUniversity of Illinois Chicago · US

Funding

Angiotensin converting enzyme, angiotensin II, and arrhythmiaR01HL085558 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDLEY, SAMUEL C · 2007 to 2010
$1.5M
Stem Cell Therapy and ArrhythmiaR01HL073753 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDLEY, SAMUEL C · 2005 to 2008
$1.4M
EVALUATION OF THE NA+ CHANNEL OUTER VESTIBULER01HL064828 · NHLBI · EMORY UNIVERSITY · PI DUDLEY, SAMUEL C · 2000 to 2004
$811k
NHLBI NIH HHS HL64828NHLBI NIH HHS HL73753NHLBI NIH HHS R01 HL064828NHLBI NIH HHS R01 HL073753NHLBI NIH HHS R01 HL085558
6 · The paper itself

Abstract

mu-Conotoxin GIIIA (mu-CTX) is a high-affinity ligand for the outer vestibule of selected isoforms of the voltage-gated Na(+) channel. The detailed bases for the toxin's high affinity binding and isoform selectivity are unclear. The outer vestibule is lined by four pore-forming (P) loops, each with an acidic residue near the mouth of the vestibule. mu-CTX has seven positively charged residues that may interact with these acidic P-loop residues. Using pair-wise alanine replacement of charged toxin and channel residues, in conjunction with double mutant cycle analysis, we determined coupling energies for specific interactions between each P-loop acidic residue and selected toxin residues to systematically establish quantitative restraints on the toxin orientation in the outer vestibule. Xenopus oocytes were injected with the mutant or native Na(+) channel mRNA, and currents measured by two-electrode voltage clamp. Mutant cycle analysis revealed novel, strong, toxin-channel interactions between K9/E403, K11/D1241, K11/D1532, and R19/D1532. Experimentally determined coupling energies for interacting residue pairs provided restraints for molecular dynamics simulations of mu-CTX docking. Our simulations suggest a refined orientation of the toxin in the pore, with toxin basic side-chains playing key roles in high-affinity binding. This modeling also provides a set of testable predictions for toxin-channel interactions, hitherto not described, that may contribute to high-affinity binding and channel isoform selectivity.

Indexed as

Amino Acid SequenceAnimalsComputer SimulationConotoxinsModels, BiologicalMolecular ConformationMolecular Sequence DataMutationOocytesProtein IsoformsProtein Structure, TertiaryRNA, MessengerSnailsSodium ChannelsXenopusconotoxin GIIIConotoxinsProtein IsoformsRNA, MessengerSodium Channels

Identifiers

PMID18690041
PMCPMC3212855
OpenAlexW2100409593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.