ArticleGenetics2008
Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis.
Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Phenolic Acids Induce Nod Factor Production in Lotus japonicus-Mesorhizobium Symbiosis.Microbes and environments · 2022Article
- Oligo-FISH barcode in beans: a new chromosome identification system.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- BAC- and oligo-FISH mapping reveals chromosome evolution among Vigna angularis, V. unguiculata, and Phaseolus vulgaris.Chromosoma · 2021Article
- Discovery of SNPs in important legumes through comparative genome analysis and conversion of SNPs into PCR-based markers.Journal of genetics · 2021Article
- Breaks of macrosynteny and collinearity among moth bean (Vigna aconitifolia), cowpea (V. unguiculata), and common bean (Phaseolus vulgaris).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020Article
- High-Density SNP-Based Association Mapping of Seed Traits in Fenugreek Reveals Homology with Clover.Genes · 2020Article
- Reconstruction of a composite comparative map composed of ten legume genomes.Genes & genomics · 2017Article
- Functional conservation and diversification of the soybean maturity gene E1 and its homologs in legumes.Scientific reports · 2016Article
- Major Contribution of Flowering Time and Vegetative Growth to Plant Production in Common Bean As Deduced from a Comparative Genetic Mapping.Frontiers in plant science · 2016Article
- High Level of Nonsynonymous Changes in Common Bean Suggests That Selection under Domestication Increased Functional Diversity at Target Traits.Frontiers in plant science · 2016Article
- Intra- and interchromosomal rearrangements between cowpea [Vigna unguiculata (L.) Walp.] and common bean (Phaseolus vulgaris L.) revealed by BAC-FISH.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015Article
- Naturally occurring diversity helps to reveal genes of adaptive importance in legumes.Frontiers in plant science · 2015Article
- Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering.Plant, cell & environment · 2014Article
- Genetic diversity and population structure among pea (Pisum sativum L.) cultivars as revealed by simple sequence repeat and novel genic markers.Molecular biotechnology · 2014Article
- Comparative and evolutionary analysis of major peanut allergen gene families.Genome biology and evolution · 2014Article
- Transferability of molecular markers from major legumes to Lathyrus spp. for their application in mapping and diversity studies.Molecular biology reports · 2014Article
- Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir.PloS one · 2014Article
- Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil.BMC genomics · 2013Article
- In silico comparison of genomic regions containing genes coding for enzymes and transcription factors for the phenylpropanoid pathway in Phaseolus vulgaris L. and Glycine max L. Merr.Frontiers in plant science · 2013Article
- A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers.Annals of botany · 2013Article
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have previously described a bioinformatics pipeline identifying comparative anchor-tagged sequence (CATS) loci, combined with design of intron-spanning primers. The derived anchor markers defining the linkage position of homologous genes are essential for evaluating genome conservation among related species and facilitate transfer of genetic and genome information between species. Here we validate this global approach in the common bean and in the AA genome complement of the allotetraploid peanut. We present the successful conversion of approximately 50% of the bioinformatics-defined primers into legume anchor markers in bean and diploid Arachis species. One hundred and four new loci representing single-copy genes were added to the existing bean map. These new legume anchor-marker loci enabled the alignment of genetic linkage maps through corresponding genes and provided an estimate of the extent of synteny and collinearity. Extensive macrosynteny between Lotus and bean was uncovered on 8 of the 11 bean chromosomes and large blocks of macrosynteny were also found between bean and Medicago. This suggests that anchor markers can facilitate a better understanding of the genes and genetics of important traits in crops with largely uncharacterized genomes using genetic and genome information from related model plants.
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