Evidence map›Paper›PMID 18689675›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Acquisition of classical CTX prophage from Vibrio cholerae O141 by El Tor strains aided by lytic phages and chitin-induced competence.

S M Nashir Udden, M Shamim Hasan Zahid, Kuntal Biswas, Qazi Shafi Ahmad, Alejandro Cravioto, G Balakrish Nair, John J Mekalanos, Shah M Faruque

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Review
  3. Manipulation of natural transformation by AbaR-type islands promotes fixation of antibiotic resistance inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Review
  5. Genomic dissection of theMicrobial genomics · 2022
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  6. Article
  7. Article
  8. Article
  9. Utilization of Small RNA Genes to DistinguishThe American journal of tropical medicine and hygiene · 2019
    Article
  10. Conversion of aFrontiers in microbiology · 2019
    Article
  11. Article
  12. Design and Construction ofFrontiers in microbiology · 2018
    Article
  13. Replication ofProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

S M Nashir UddenMolecular Genetics Laboratory, International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka-1212, Bangladesh.
M Shamim Hasan Zahid
Kuntal Biswas
Qazi Shafi Ahmad
Alejandro Cravioto
G Balakrish Nair
John J Mekalanos
Shah M Faruque
International Centre for Diarrhoeal Disease Research · BDHarvard University · USNational Institute of Cholera and Enteric Diseases · IN

Funding

Phages and Genomic Variation in Vibrio Cholerae EvolutionR01GM068851 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MEKALANOS, JOHN JOSEPH · 2003 to 2015
$3.9M
Genetic and Ecological Factors in Transmissibility and Epidemic Cycle of CholeraR01AI070963 · NIAID · HARVARD MEDICAL SCHOOL · PI MEKALANOS, JOHN JOSEPH · 2007 to 2010
$1.3M
NIAID NIH HHS AI070963-01A1NIAID NIH HHS R01 AI070963NIGMS NIH HHS 2R01-GM068851-5NIGMS NIH HHS R01 GM068851
6 · The paper itself

Abstract

The El Tor biotype of Vibrio cholerae O1, causing the current seventh pandemic of cholera, has replaced the classical biotype, which caused the sixth pandemic. The CTX prophages encoding cholera toxin in the two biotypes have distinct repressor (rstR) genes. Recently, new variants of El Tor strains that carry the classical type (CTX(class)) prophage have emerged. These "hybrid" strains apparently originate through lateral gene transfer and recombination events. To explore possible donors of the CTX(class) prophage and its mode of transfer, we tested environmental V. cholerae isolates for the presence of CTX(class) prophage and mobility of the phage genome. Of the 272 environmental V. cholerae isolates tested, 6 were found to carry the CTX(class) prophage; all of these belonged to the O141 serogroup. These O141 strains were unable to produce infectious CTX(class) phage or to transmit the prophage to recipient strains in the mouse model of infection; however, the CTX(class) prophage was acquired by El Tor strains when cultured with the O141 strains in microcosms composed of filtered environmental water, a chitin substrate, and a V. cholerae O141-specific bacteriophage. The CTX(class) prophage either coexisted with or replaced the resident CTX(ET) prophage, resulting in El Tor strains with CTX genotypes similar to those of the naturally occurring hybrid strains. Our results support a model involving phages and natural chitin substrate in the emergence of new variants of pathogenic V. cholerae. Furthermore, the O141 strains apparently represent an alternative reservoir of the CTX(class) phage genome, because the classical V. cholerae O1 strains are possibly extinct.

Indexed as

ChitinDNA, ViralGenome, ViralMicrosomesProphagesVibrio choleraeChitinDNA, Viral

Identifiers

PMID18689675
PMCPMC2575248
OpenAlexW2135580745

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.