Evidence map›Paper›PMID 18687868›Full record

ArticleProtein science : a publication of the Protein Society2008

Electrostatic contributions drive the interaction between Staphylococcus aureus protein Efb-C and its complement target C3d.

Nurit Haspel, Daniel Ricklin, Brian V Geisbrecht, Lydia E Kavraki, John D Lambris

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The Streptococcus agalactiae complement interfering protein combines multiple complement-inhibitory mechanisms by interacting with both C4 and C3 ligands.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  5. Native State of Complement Protein C3d Analysed via Hydrogen Exchange and Conformational Sampling.International journal of computational biology and drug design · 2018
    Article
  6. Article
  7. Article
  8. Review
  9. Complement System Part II: Role in Immunity.Frontiers in immunology · 2015
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Allosteric inhibition of complement function by a staphylococcal immune evasion protein.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Nurit HaspelDepartment of Computer Science, Rice University, Houston, Texas 77005, USA.
Daniel Ricklin
Brian V Geisbrecht
Lydia E Kavraki
John D Lambris
Rice University · USUniversity of Pennsylvania · USUniversity of Missouri–Kansas City · US

Funding

Role of complement in kidney disorders: from hemodialysis to transportationP01AI068730 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI LAMBRIS, JOHN D · 2007 to 2018
$16.0M
Structure Function Analysis of Staphylococcal Complement InhibitorsR01AI071028 · NIAID · UNIVERSITY OF MISSOURI KANSAS CITY · PI GEISBRECHT, BRIAN V · 2008 to 2012
$1.5M
Dimensionality Reduction and Search for Analyzing Protein StructureR01GM078988 · NIGMS · RICE UNIVERSITY · PI KAVRAKI, LYDIA E. · 2006 to 2009
$718k
NIAID NIH HHS AI071028NIAID NIH HHS P01 AI068730NIAID NIH HHS P01AI68730NIAID NIH HHS R01 AI071028NIGMS NIH HHS GM078988NIGMS NIH HHS R01 GM078988
6 · The paper itself

Abstract

The C3-inhibitory domain of Staphylococcus aureus extracellular fibrinogen-binding protein (Efb-C) defines a novel three-helix bundle motif that regulates complement activation. Previous crystallographic studies of Efb-C bound to its cognate subdomain of human C3 (C3d) identified Arg-131 and Asn-138 of Efb-C as key residues for its activity. In order to characterize more completely the physical and chemical driving forces behind this important interaction, we employed in this study a combination of structural, biophysical, and computational methods to analyze the interaction of C3d with Efb-C and the single-point mutants R131A and N138A. Our results show that while these mutations do not drastically affect the structure of the Efb-C/C3d recognition complex, they have significant adverse effects on both the thermodynamic and kinetic profiles of the resulting complexes. We also characterized other key interactions along the Efb-C/C3d binding interface and found an intricate network of salt bridges and hydrogen bonds that anchor Efb-C to C3d, resulting in its potent complement inhibitory properties.

Indexed as

Static ElectricityBacterial ProteinsComplement C3dComputational BiologyCrystallizationHumansHydrogen BondingPoint MutationProtein BindingProtein Structure, TertiaryRecombinant ProteinsStaphylococcus aureusThermodynamicsX-Ray DiffractionBacterial ProteinsComplement C3dEfb protein, Staphylococcus aureusRecombinant Proteins

Identifiers

PMID18687868
PMCPMC2578803
OpenAlexW2156625232

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.