ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2008
Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Article
- The origin and evolution of cultivated rice and genomic signatures of heterosis for yield traits in super-hybrid rice.BMC biology · 2025Article
- Large-Scale Rice Mutant Establishment and High-Throughput Mutant Manipulation Help Advance Rice Functional Genomics.Plants (Basel, Switzerland) · 2025Review
- Genome-wide association mapping combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- QTL mapping and identification of candidate genes for cold tolerance at the germination stage in wild rice.Genes & genomics · 2023Article
- Transcriptome analysis of phosphorus stress responsiveness in the seedlings of Dongxiang wild rice (Oryza rufipogon Griff.).Biological research · 2018Article
- Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.Nature genetics · 2018Article
- Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.Current genomics · 2016Article
- Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.).PloS one · 2016Article
- De Novo Transcriptome Sequencing of Oryza officinalis Wall ex Watt to Identify Disease-Resistance Genes.International journal of molecular sciences · 2015Article
- Exploring the rice dispensable genome using a metagenome-like assembly strategy.Genome biology · 2015Article
- Transcriptomic Analysis and the Expression of Disease-Resistant Genes in Oryza meyeriana under Native Condition.PloS one · 2015Article
- Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.Plant & cell physiology · 2013Article
- Article
- Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing.BMC genomics · 2010Article
- Efficient plant gene identification based on interspecies mapping of full-length cDNAs.DNA research : an international journal for rapid publication of reports on genes and genomes · 2010Article
- Genomics and bioinformatics resources for crop improvement.Plant & cell physiology · 2010Review
- Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis.BMC genomics · 2010Article
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9 authors.
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Abstract
A huge amount of cDNA and EST resources have been developed for cultivated rice species Oryza sativa; however, only few cDNA resources are available for wild rice species. In this study, we isolated and completely sequenced 1888 putative full-length cDNA (FLcDNA) clones from wild rice Oryza rufipogon Griff. W1943 for comparative analysis between wild and cultivated rice species. Two cDNA libraries were constructed from 3-week-old leaf samples under either normal or cold-treated conditions. Homology searching of these cDNA sequences revealed that >96.8% of the wild rice cDNAs were matched to the cultivated rice O. sativa ssp. japonica cv. Nipponbare genome sequence. However, <22% of them were fully matched to the cv. Nipponbare genome sequence. The comparative analysis showed that O. rufipogon W1943 had greater similarity to O. sativa ssp. japonica than to ssp. indica cultivars. In addition, 17 novel rice cDNAs were identified, and 41 putative tissue-specific expression genes were defined through searching the rice massively parallel signature-sequencing database. In conclusion, these FLcDNA clones are a resource for further function verification and could be broadly utilized in rice biological studies.
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