Evidence map›Paper›PMID 18687323›Full record

ArticleDevelopmental biology2008

Organ-specific requirements for Hdac1 in liver and pancreas formation.

Emily S Noël, Antonio Casal-Sueiro, Elisabeth Busch-Nentwich, Heather Verkade, P Duc Si Dong, Derek L Stemple, Elke A Ober

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
  2. Using different zebrafish models to explore liver regeneration.Frontiers in cell and developmental biology · 2024
    Review
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  8. A single-cell-resolution fate map of endoderm reveals demarcation of pancreatic progenitors by cell cycle.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Zebrafish Discoveries in Cancer Epigenetics.Advances in experimental medicine and biology · 2016
    Review
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  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Emily S NoëlNational Institute for Medical Research, Division of Developmental Biology, The Ridgeway, Mill Hill, London, UK.
Antonio Casal-Sueiro
Elisabeth Busch-Nentwich
Heather Verkade
P Duc Si Dong
Derek L Stemple
Elke A Ober
University of California, San Francisco · USWellcome Sanger Institute · GB

Funding

Medical Research Council MC_U117581329
6 · The paper itself

Abstract

Liver, pancreas and lung originate from the presumptive foregut in temporal and spatial proximity. This requires precisely orchestrated transcriptional activation and repression of organ-specific gene expression within the same cell. Here, we show distinct roles for the chromatin remodelling factor and transcriptional repressor Histone deacetylase 1 (Hdac1) in endodermal organogenesis in zebrafish. Loss of Hdac1 causes defects in timely liver specification and in subsequent differentiation. Mosaic analyses reveal a cell-autonomous requirement for hdac1 within the hepatic endoderm. Our studies further reveal specific functions for Hdac1 in pancreas development. Loss of hdac1 causes the formation of ectopic endocrine clusters anteriorly to the main islet, as well as defects in exocrine pancreas specification and differentiation. In addition, we observe defects in extrahepatopancreatic duct formation and morphogenesis. Finally, loss of hdac1 results in an expansion of the foregut endoderm in the domain from which the liver and pancreas originate. Our genetic studies demonstrate that Hdac1 is crucial for regulating distinct steps in endodermal organogenesis. This suggests a model in which Hdac1 may directly or indirectly restrict foregut fates while promoting hepatic and exocrine pancreatic specification and differentiation, as well as pancreatic endocrine islet morphogenesis. These findings establish zebrafish as a tractable system to investigate chromatin remodelling factor functions in controlling gene expression programmes in vertebrate endodermal organogenesis.

Indexed as

Amino Acid SequenceAnimalsCell DifferentiationCell ProliferationEndodermHepatocytesHistone Deacetylase 1Histone DeacetylasesLiverLungMolecular Sequence DataMutationOrgan SpecificityPancreasZebrafishZebrafish ProteinsHDAC1 protein, zebrafishHistone Deacetylase 1Histone DeacetylasesZebrafish Proteins

Identifiers

PMID18687323
PMCPMC3710974
OpenAlexW2057165711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.