Evidence map›Paper›PMID 18687138›Full record

ArticleRetrovirology2008

Nuclear import of Avian Sarcoma Virus integrase is facilitated by host cell factors.

Mark D Andrake, Monica M Sauter, Kim Boland, Andrew D Goldstein, Maryem Hussein, Anna Marie Skalka

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Avian retroviral replication.Current opinion in virology · 2013
    Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Mark D AndrakeInstitute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA 19111, USA. mark.andrake@fccc.edu
Monica M Sauter
Kim Boland
Andrew D Goldstein
Maryem Hussein
Anna Marie Skalka
Fox Chase Cancer Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
INTEGRATION OF RETROVIRAL DNA--ACCESSING HOST TARGET DNAR01CA071515 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI KATZ, RICHARD ALAN · 1996 to 2016
$7.6M
STRUCTURE/FUNCTION OF INTEGRASER01AI040385 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI ANDRAKE, MARK DAVID · 1997 to 2016
$7.1M
NUCLEAR TARGETING OF THE ASV PREINTEGRATION COMPLEXF32AI009924 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI SAUTER, MONICA M · 1997 to 1999
–
NCI NIH HHS CA006927NCI NIH HHS CA071515NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA071515NIAID NIH HHS AI040385NIAID NIH HHS F32 AI009924NIAID NIH HHS F32AI09924NIAID NIH HHS R01 AI040385
6 · The paper itself

Abstract

backgroundIntegration of retroviral DNA into the host cell genome is an obligatory step in the virus life cycle. In previous reports we identified a sequence (amino acids 201-236) in the linker region between the catalytic core and C-terminal domains of the avian sarcoma virus (ASV) integrase protein that functions as a transferable nuclear localization signal (NLS) in mammalian cells. The sequence is distinct from all known NLSs but, like many, contains basic residues that are essential for activity.

resultsOur present studies with digitonin-permeabilized HeLa cells show that nuclear import mediated by the NLS of ASV integrase is an active, saturable, and ATP-dependent process. As expected for transport through nuclear pore complexes, import is blocked by treatment of cells with wheat germ agglutinin. We also show that import of ASV integrase requires soluble cellular factors but does not depend on binding the classical adapter Importin-alpha. Results from competition studies indicate that ASV integrase relies on one or more of the soluble components that mediate transport of the linker histone H1.

conclusionThese results are consistent with a role for ASV integrase and cytoplasmic cellular factors in the nuclear import of its viral DNA substrate, and lay the foundation for identification of host cell components that mediate this reaction.

Indexed as

Host-Pathogen InteractionsActive Transport, Cell NucleusAmino Acid SequenceAvian Sarcoma VirusesCell NucleusCytoplasmHeLa CellsHistonesHumansIntegrasesMolecular Sequence DataNuclear Localization SignalsRetroviridae InfectionsViral ProteinsHistonesIntegrasesNuclear Localization SignalsViral Proteins

Identifiers

PMID18687138
PMCPMC2527327
OpenAlexW2118625050

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.