Evidence map›Paper›PMID 18684332›Full record

ArticleBMC plant biology2008

Transcriptional responses of Arabidopsis thaliana plants to As (V) stress.

Jason M Abercrombie, Matthew D Halfhill, Priya Ranjan, Murali R Rao, Arnold M Saxton, Joshua S Yuan, C Neal Stewart

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 215 citations in OpenAlex.

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  20. Enhanced Arsenic Tolerance inMicroorganisms · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jason M AbercrombieDepartment of Plant Sciences, University of Tennessee, 2431 Joe Johnson Blvd., Knoxville, TN 37996-4561, USA. jabercro@utk.edu
Matthew D Halfhill
Priya Ranjan
Murali R Rao
Arnold M Saxton
Joshua S Yuan
C Neal Stewart
University of Tennessee at Knoxville · USSaint Ambrose University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundArsenic is toxic to plants and a common environmental pollutant. There is a strong chemical similarity between arsenate [As (V)] and phosphate (Pi). Whole genome oligonucleotide microarrays were employed to investigate the transcriptional responses of Arabidopsis thaliana plants to As (V) stress.

resultsAntioxidant-related genes (i.e. coding for superoxide dismutases and peroxidases) play prominent roles in response to arsenate. The microarray experiment revealed induction of chloroplast Cu/Zn superoxide dismutase (SOD) (at2g28190), Cu/Zn SOD (at1g08830), as well as an SOD copper chaperone (at1g12520). On the other hand, Fe SODs were strongly repressed in response to As (V) stress. Non-parametric rank product statistics were used to detect differentially expressed genes. Arsenate stress resulted in the repression of numerous genes known to be induced by phosphate starvation. These observations were confirmed with qRT-PCR and SOD activity assays.

conclusionMicroarray data suggest that As (V) induces genes involved in response to oxidative stress and represses transcription of genes induced by phosphate starvation. This study implicates As (V) as a phosphate mimic in the cell by repressing genes normally induced when available phosphate is scarce. Most importantly, these data reveal that arsenate stress affects the expression of several genes with little or unknown biological functions, thereby providing new putative gene targets for future research.

Indexed as

Transcription, GeneticArabidopsisArabidopsis ProteinsArsenatesCluster AnalysisGene Expression ProfilingGenes, PlantOligonucleotide Array Sequence AnalysisOxidative StressPhosphatesReverse Transcriptase Polymerase Chain ReactionRNA, PlantStatistics, NonparametricSuperoxide DismutaseTranscription FactorsArabidopsis ProteinsArsenatesPhosphatesRNA, PlantSuperoxide DismutaseTranscription Factors

Identifiers

PMID18684332
PMCPMC2547109
OpenAlexW2044256551

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.