Evidence map›Paper›PMID 18682811›Full record

ArticleMolecular vision2008

Analysis of the 3' untranslated regions of alpha-tubulin and S-crystallin mRNA and the identification of CPEB in dark- and light-adapted octopus retinas.

Shannan Kelly, Hideki Yamamoto, Laura J Robles

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shannan KellyDepartment of Biology, California State University, Dominguez Hills, Carson, CA 90747, USA.
Hideki Yamamoto
Laura J Robles
California State University, Dominguez Hills · US

Funding

Transport Phenomena in Cell Cytoplasm and Ion ChannelsS06GM008156 · NIGMS · CALIFORNIA STATE UNIV-DOMINGUEZ HILLS · PI ROBLES, LAURA J. · 1989 to 2008
$5.0M
NIGMS NIH HHS 5S06GM008156NIGMS NIH HHS S06 GM008156
6 · The paper itself

Abstract

purposeWe previously reported the differential expression and translation of mRNA and protein in dark- and light-adapted octopus retinas, which may result from cytoplasmic polyadenylation element (CPE)-dependent mRNA masking and unmasking. Here we investigate the presence of CPEs in alpha-tubulin and S-crystallin mRNA and report the identification of cytoplasmic polyadenylation element binding protein (CPEB) in light- and dark-adapted octopus retinas.

methods3'-RACE and sequencing were used to isolate and analyze the 3'-UTRs of alpha-tubulin and S-crystallin mRNA. Total retinal protein isolated from light- and dark-adapted octopus retinas was subjected to western blot analysis followed by CPEB antibody detection, PEP-171 inhibition of CPEB, and dephosphorylation of CPEB.

resultsThe following CPE-like sequence was detected in the 3'-UTR of isolated long S-crystallin mRNA variants: UUUAACA. No CPE or CPE-like sequences were detected in the 3'-UTRs of alpha-tubulin mRNA or of the short S-crystallin mRNA variants. Western blot analysis detected CPEB as two putative bands migrating between 60-80 kDa, while a third band migrated below 30 kDa in dark- and light-adapted retinas.

conclusionsThe detection of CPEB and the identification of the putative CPE-like sequences in the S-crystallin 3'-UTR suggest that CPEB may be involved in the activation of masked S-crystallin mRNA, but not in the regulation of alpha-tubulin mRNA, resulting in increased S-crystallin protein synthesis in dark-adapted octopus retinas.

Indexed as

Darkness3' Untranslated RegionsAdaptation, PhysiologicalAnimalsBlotting, WesternCrystallinsElectrophoresis, Agar GelLightModels, GeneticMolecular WeightmRNA Cleavage and Polyadenylation FactorsOctopodiformesRetinaRNA, MessengerTubulin3' Untranslated RegionsCrystallinsmRNA Cleavage and Polyadenylation FactorsRNA, MessengerTubulin

Identifiers

PMID18682811
PMCPMC2493028
OpenAlexW2159965633

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.