Evidence map›Paper›PMID 18681939›Full record

ArticleMolecular microbiology2008

The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters.

Audra J Pompeani, Joseph J Irgon, Michael F Berger, Martha L Bulyk, Ned S Wingreen, Bonnie L Bassler

Abstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

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  17. Genome-Scale Metabolic Model ofFrontiers in genetics · 2020
    Article
  18. Article
  19. Article
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Audra J PompeaniDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Joseph J Irgon
Michael F Berger
Martha L Bulyk
Ned S Wingreen
Bonnie L Bassler

Funding

Generation of an In Vivo Human Genome Transcriptional Enhancer DatasetR01HG003988 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Len Alexander Pennacchio · 2006 to 2026
$24.1M
Universal, Compact Combinatorial Microarrays for DNA Binding Site DiscoveryR01HG003985 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI BULYK, MARTHA L · 2006 to 2017
$4.9M
Structure-Function Analysis of AI-2 Quorum SensingR01AI054442 · NIAID · PRINCETON UNIVERSITY · PI HUGHSON, FREDERICK M · 2003 to 2012
$4.5M
Intra-and Inter-Species Communication in BacteriaR01GM065859 · NIGMS · PRINCETON UNIVERSITY · PI BASSLER, BONNIE L · 2002 to 2015
$4.2M
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG003985NHGRI NIH HHS R01 HG003988NIAID NIH HHS R01 AI 05442NIAID NIH HHS R01 AI054442NIGMS NIH HHS R01 GM065859PHS HHS R01 G 065859-05
6 · The paper itself

Abstract

Quorum sensing is the process of cell-to-cell communication by which bacteria communicate via secreted signal molecules called autoinducers. As cell population density increases, the accumulation of autoinducers leads to co-ordinated changes in gene expression across the bacterial community. The marine bacterium, Vibrio harveyi, uses three autoinducers to achieve intra-species, intra-genera and inter-species cell-cell communication. The detection of these autoinducers ultimately leads to the production of LuxR, the quorum-sensing master regulator that controls expression of the genes in the quorum-sensing regulon. LuxR is a member of the TetR protein superfamily; however, unlike other TetR repressors that typically repress their own gene expression and that of an adjacent operon, LuxR is capable of activating and repressing a large number of genes. Here, we used protein binding microarrays and a two-layered bioinformatics approach to show that LuxR binds a 21 bp consensus operator with dyad symmetry. In vitro and in vivo analyses of two promoters directly regulated by LuxR allowed us to identify those bases that are critical for LuxR binding. Together, the in silico and biochemical results enabled us to scan the genome and identify novel targets of LuxR in V. harveyi and thus expand the understanding of the quorum-sensing regulon.

Indexed as

Quorum SensingBacterial ProteinsBinding SitesDNA, BacterialFluorescence PolarizationGene Expression Regulation, BacterialGenes, BacterialMutagenesis, Site-DirectedPromoter Regions, GeneticProtein Array AnalysisRegulonRepressor ProteinsSequence Analysis, DNASubstrate SpecificityTrans-ActivatorsVibrioBacterial ProteinsDNA, BacterialLuxR autoinducer binding proteinsRepressor ProteinsTrans-Activators

Identifiers

PMID18681939
PMCPMC2628434

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.