Evidence map›Paper›PMID 18679786›Full record

ArticleVirus genes2008

Molecular characterization of rare bovine group A rotavirus G15P[11] and G15P[21] strains from eastern India: identification of simian SA11-like VP6 genes in G15P[21] strains.

Souvik Ghosh, Sudipta Samajdar, Manju Sinha, Nobumichi Kobayashi, Koki Taniguchi, Trailokya N Naik

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Article in Virus genes, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Assessment of Influential Factors for Scours Associated withAnimals : an open access journal from MDPI · 2021
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  7. Circulation of group A rotaviruses among neonates of human, cow and pig: study from Assam, a north eastern state of India.Indian journal of virology : an official organ of Indian Virological Society · 2013
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Souvik GhoshDivision of Virology, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road, Scheme XM, Beliaghata, Kolkata, 700010, West Bengal, India.
Sudipta Samajdar
Manju Sinha
Nobumichi Kobayashi
Koki Taniguchi
Trailokya N Naik
National Institute of Cholera and Enteric Diseases · INFujita Health University · JPSapporo Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During a surveillance study (November 2001-March 2005), one rare G15P[11] and two rare G15P[21] bovine group A rotavirus strains were detected in diarrhoeic calves in Eastern India. Sequence analysis of the VP8*, VP6, NSP4 and NSP5 genes of the G15P[11] strain confirmed its bovine origin. Although the NSP4 and NSP5 genes of the two G15P[21] strains were of bovine origin, their VP6 genes shared higher nucleotide and amino acid identities with simian strain SA11 (92.5-93.1% and 98.5-98.7%) than bovine strains (88.5-88.9% and 97-97.2%), and by phylogenetic analysis, exhibited clustering with SA11, distantly related to bovine strains. All these pointed towards a possible reassortment event of VP6 gene between bovine and simian (SA11-like) strains. Therefore, the present study provided molecular evidence for bovine origin of G15 strains and revealed a rare instance of genetic diversity in the bovine VP6 gene, otherwise conserved in group A rotavirus strains from cattle.

Indexed as

AnimalsCattleCattle DiseasesIndiaMolecular Sequence DataPhylogenyReassortant VirusesRotavirusRotavirus InfectionsSequence AlignmentViral Nonstructural ProteinsViral Structural ProteinsViral Nonstructural ProteinsViral Structural Proteins

Identifiers

PMID18679786
OpenAlexW2071966778

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.