Evidence map›Paper›PMID 18679517›Full record

ArticleOptics express2008

Quantification of three-dimensional dynamics of intercellular geometry under mechanical loading using a weighted directional adaptive-threshold method.

Nikola Kojic, Austin Huang, Euiheon Chung, Daniel Tschumperlin, Peter T So

Open access · goldAbstract read
In one paragraph

Article in Optics express, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. An EGFR autocrine loop encodes a slow-reacting but dominant mode of mechanotransduction in a polarized epithelium.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Nikola KojicHarvard-MIT Division of Health Sciences and Technology, 77 Mass. Ave., MA 02139, USA.
Austin Huang
Euiheon Chung
Daniel Tschumperlin
Peter T So
Massachusetts Institute of Technology · USHarvard University · US

Funding

Transduction of the environment in airway epitheliumR01HL082856 · NHLBI · HARVARD SCHOOL OF PUBLIC HEALTH · PI TSCHUMPERLIN, DANIEL J. · 2006 to 2009
$1.4M
NHLBI NIH HHS HL-082856NHLBI NIH HHS R01 HL082856
6 · The paper itself

Abstract

Capturing and quantifying dynamic changes in three-dimensional cellular geometries on fast time scales is a challenge because of mechanical limitations of imaging systems as well as of the inherent tradeoffs between temporal resolution and image quality. We have combined a custom high-speed two-photon microscopy approach with a novel image segmentation method, the weighted directional adaptive-threshold (WDAT), to quantify the dimensions of intercellular spaces of cells under compressive stress on timescales previously inaccessible. The adaptation of a high-speed two-photon microscope addressed the need to capture events occurring on short timescales, while the WDAT method was developed to address artifacts of standard intensity-based analysis methods when applied to this system. Our novel approach is demonstrated by the enhanced temporal analysis of the three-dimensional cellular and extracellular deformations that accompany compressive loading of airway epithelial cells.

Indexed as

AlgorithmsCells, CulturedCompressive StrengthElasticityEpithelial CellsHumansImage Interpretation, Computer-AssistedImaging, Three-DimensionalMechanotransduction, CellularMicroscopy, ConfocalMicroscopy, Fluorescence, MultiphotonStress, Mechanical

Identifiers

PMID18679517
PMCPMC2631567
OpenAlexW1983926069

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.