Evidence map›Paper›PMID 18675787›Full record

ArticleBiochemical and biophysical research communications2008

Alternative splicing generates a short BCL6 (BCL6S) isoform encoding a compact repressor.

Yulei Shen, Baosheng Ge, Himabindu Ramachandrareddy, Timothy McKeithan, Wing C Chan

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yulei ShenDepartment of Pathology and Microbiology, University of Nebraska Medical Center, 600S. 42th Street, Omaha, NE 68198-7660, USA.
Baosheng Ge
Himabindu Ramachandrareddy
Timothy McKeithan
Wing C Chan
University of Nebraska Medical Center · US

Funding

Molecular Signatures to Improve Diagnosis and Outcome PrU01CA114778 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CHAN, WING C. · 2005 to 2009
$8.7M
NCI NIH HHS 5U01/CA114778NCI NIH HHS U01 CA114778
6 · The paper itself

Abstract

BCL6 gene transcribes two main mRNA isoforms, variant 1 and variant 2, which have distinct transcription start sites. However, these two isoforms encode identical BCL6 protein. Recently, a third variant was sequenced from a human hippocampus cDNA library (DB465062). In this study, we cloned and sequenced a novel BCL6 spliced isoform (BCL6S) which lacks exon 7 that encodes the first two zinc fingers of BCL6. We found a splicing isoform, BCL6S, that excludes exon 7 but retains the last four of the six zinc fingers (ZFs) coding region of the BCL6 gene. BCL6S mRNA and protein were expressed in human cell lines and tissues that expressed BCL6, but accounted for a minor portion of BCL6 transcripts or protein. BCL6S protein was also detectable in BCL6 positive cells. BCL6S could form homodimers or heterodimers with BCL6 and could bind to classical BCL6-binding sites. Luciferase reporter assays demonstrated that BCL6S could effectively repress typical BCL6 target genes. BCL6S is a compact repressor that may have a functional role in normal and neoplastic germinal center B cells.

Indexed as

Alternative SplicingCell LineDimerizationDNA-Binding ProteinsGenes, ReporterHumansLuciferasesProtein Interaction MappingProtein IsoformsProto-Oncogene Proteins c-bcl-6Repressor ProteinsTranscription, GeneticBCL6 protein, humanDNA-Binding ProteinsLuciferasesProtein IsoformsProto-Oncogene Proteins c-bcl-6Repressor Proteins

Identifiers

PMID18675787
PMCPMC2573862
OpenAlexW1975210571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.